RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CAMK2N2Q96S95 79 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 SPANXDQ9BXN6 97 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 SPANXCQ9NY87 97 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 C6orf48Q9UBA6 75 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 ERG28Q9UKR5 140 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 HINT1P49773 126 aaPredicted RBP8.09□□□□□ -1.11
PNKP-217ENST00000625216 C9orf116Q5BN46 136 aaPredicted RBP8.09□□□□□ -1.11
PNKP-217ENST00000625216 DAND5Q8N907 189 aa8.09□□□□□ -1.11
PNKP-217ENST00000625216 SLPIP03973 132 aa8.08□□□□□ -1.12
PNKP-217ENST00000625216 PFN2P35080 140 aa8.08□□□□□ -1.12
PNKP-217ENST00000625216 TAL2Q16559 108 aa8.08□□□□□ -1.12
PNKP-217ENST00000625216 BVES-AS1Q5T3Y7 98 aa8.08□□□□□ -1.12
PNKP-217ENST00000625216 HIST1H4GQ99525 98 aa8.08□□□□□ -1.12
PNKP-217ENST00000625216 F8WDY8 70 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 EIF4EBP3O60516 100 aaPredicted RBP8.07□□□□□ -1.12
PNKP-217ENST00000625216 FXYD2P54710 66 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 NPC2P61916 151 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 SYCNQ0VAF6 134 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 SRSF9Q13242 221 aaKnown RBP eCLIP8.07□□□□□ -1.12
PNKP-217ENST00000625216 CIRBPQ14011 172 aaKnown RBP8.07□□□□□ -1.12
PNKP-217ENST00000625216 SOSTDC1Q6X4U4 206 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 CEND1Q8N111 149 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 SNHG12Q9BXW3 62 aa8.07□□□□□ -1.12
PNKP-217ENST00000625216 TRBV30A0A0K0K1B3 111 aa8.06□□□□□ -1.12
PNKP-217ENST00000625216 LINC00158P58513 81 aa8.06□□□□□ -1.12
PNKP-217ENST00000625216 KRTAP10-4P60372 401 aaPredicted RBP8.06□□□□□ -1.12
PNKP-217ENST00000625216 MIR7-3HGQ8N6C7 128 aa8.06□□□□□ -1.12
PNKP-217ENST00000625216 CARD19Q96LW7 228 aa8.06□□□□□ -1.12
PNKP-217ENST00000625216 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.06□□□□□ -1.12
PNKP-217ENST00000625216 KRTAP29-1A8MX34 341 aaPredicted RBP8.05□□□□□ -1.12
PNKP-217ENST00000625216 J3QL48 77 aa8.05□□□□□ -1.12
PNKP-217ENST00000625216 M0R143 59 aa8.05□□□□□ -1.12
PNKP-217ENST00000625216 BATFQ16520 125 aa8.05□□□□□ -1.12
PNKP-217ENST00000625216 MUSTN1Q8IVN3 82 aa8.05□□□□□ -1.12
PNKP-217ENST00000625216 DPH3Q96FX2 82 aa8.05□□□□□ -1.12
PNKP-217ENST00000625216 RPL37AP61513 92 aaKnown RBP8.04□□□□□ -1.12
PNKP-217ENST00000625216 Q6ZVH6 145 aa8.04□□□□□ -1.12
PNKP-217ENST00000625216 LINC00308Q8TCZ7 52 aa8.04□□□□□ -1.12
PNKP-217ENST00000625216 PANO1I0J062 215 aa8.03□□□□□ -1.12
PNKP-217ENST00000625216 COX17Q14061 63 aa8.03□□□□□ -1.12
PNKP-217ENST00000625216 IFITM1P13164 125 aa8.02□□□□□ -1.13
PNKP-217ENST00000625216 PTTG1IPP53801 180 aa8.02□□□□□ -1.13
PNKP-217ENST00000625216 RNF151Q2KHN1 245 aa8.02□□□□□ -1.13
PNKP-217ENST00000625216 PKIGQ9Y2B9 76 aa8.02□□□□□ -1.13
PNKP-217ENST00000625216 A4D1N5 150 aa8.01□□□□□ -1.13
PNKP-217ENST00000625216 SPACA4Q8TDM5 124 aa8.01□□□□□ -1.13
PNKP-217ENST00000625216 SND1-IT1Q9HBX3 110 aa8.01□□□□□ -1.13
PNKP-217ENST00000625216 FAT3Q8TDW7 4589 aa8□□□□□ -1.13
PNKP-217ENST00000625216 A0A087WYN8 130 aa8□□□□□ -1.13
PNKP-217ENST00000625216 OXTP01178 125 aa8□□□□□ -1.13
PNKP-217ENST00000625216 PPDPFQ9H3Y8 114 aa8□□□□□ -1.13
PNKP-217ENST00000625216 PLAC8Q9NZF1 115 aa8□□□□□ -1.13
PNKP-217ENST00000625216 LRP1Q07954 4544 aaKnown RBP8□□□□□ -1.13
PNKP-217ENST00000625216 NDUFC2-KCTD14E9PQ53 114 aa7.99□□□□□ -1.13
PNKP-217ENST00000625216 K7ERJ3 54 aa7.99□□□□□ -1.13
PNKP-217ENST00000625216 TLX1NBP0CAT3 122 aa7.99□□□□□ -1.13
PNKP-217ENST00000625216 RPL24P83731 157 aaKnown RBP7.99□□□□□ -1.13
PNKP-217ENST00000625216 Q6ZRP5 223 aa7.99□□□□□ -1.13
PNKP-217ENST00000625216 NHP2Q9NX24 153 aaKnown RBP7.99□□□□□ -1.13
PNKP-217ENST00000625216 LINC00474Q9P2X8 69 aa7.99□□□□□ -1.13
PNKP-217ENST00000625216 LOC107984156A0A0G2JMH3 177 aa7.98□□□□□ -1.13
PNKP-217ENST00000625216 A0A1B0GWB2 263 aa7.98□□□□□ -1.13
PNKP-217ENST00000625216 CHTF8P0CG12 524 aa7.98□□□□□ -1.13
PNKP-217ENST00000625216 RPL18AQ02543 176 aaKnown RBP7.98□□□□□ -1.13
PNKP-217ENST00000625216 ARL17AQ8IVW1 177 aa7.98□□□□□ -1.13
PNKP-217ENST00000625216 Q8NDZ9 215 aa7.98□□□□□ -1.13
PNKP-217ENST00000625216 TMEM238LA0A1B0GVL6 79 aa7.97□□□□□ -1.13
PNKP-217ENST00000625216 A6NJY4 79 aa7.97□□□□□ -1.13
PNKP-217ENST00000625216 CFC1BP0CG36 223 aa7.97□□□□□ -1.13
PNKP-217ENST00000625216 CFC1P0CG37 223 aa7.97□□□□□ -1.13
PNKP-217ENST00000625216 XAGE1AQ9HD64 81 aa7.97□□□□□ -1.13
PNKP-217ENST00000625216 PKHD1L1Q86WI1 4243 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 A6NDN8 102 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 GAGE2EQ4V326 116 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 C9orf129Q5T035 196 aaKnown RBP7.96□□□□□ -1.14
PNKP-217ENST00000625216 C7orf33Q8WU49 177 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 COPS9Q8WXC6 57 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 GAGE2DQ9UEU5 116 aa7.96□□□□□ -1.14
PNKP-217ENST00000625216 A0A0B4J2C4 111 aa7.95□□□□□ -1.14
PNKP-217ENST00000625216 IGKV2-24A0A0C4DH68 120 aa7.95□□□□□ -1.14
PNKP-217ENST00000625216 LOC107984640A0A0U1RRK4 108 aa7.95□□□□□ -1.14
PNKP-217ENST00000625216 IGKV2-28A0A075B6P5 120 aa7.94□□□□□ -1.14
PNKP-217ENST00000625216 A0A096LNI7 61 aa7.94□□□□□ -1.14
PNKP-217ENST00000625216 IGKV2D-28P01615 120 aa7.94□□□□□ -1.14
PNKP-217ENST00000625216 COL5A1-AS1Q5SY13 56 aa7.94□□□□□ -1.14
PNKP-217ENST00000625216 TAX1BP3O14907 124 aa7.93□□□□□ -1.14
PNKP-217ENST00000625216 GAGE2BQ13066 116 aa7.93□□□□□ -1.14
PNKP-217ENST00000625216 NDUFC2O95298 119 aa7.92□□□□□ -1.14
PNKP-217ENST00000625216 VPREB1P12018 145 aa7.92□□□□□ -1.14
PNKP-217ENST00000625216 RAB37Q96AX2 223 aa7.92□□□□□ -1.14
PNKP-217ENST00000625216 NCR3O14931 201 aa7.91□□□□□ -1.14
PNKP-217ENST00000625216 PRR3P79522 188 aaKnown RBP7.91□□□□□ -1.14
PNKP-217ENST00000625216 SERTAD4-AS1Q5TG53 156 aa7.91□□□□□ -1.14
PNKP-217ENST00000625216 LINC00337Q8N6G1 96 aa7.91□□□□□ -1.14
PNKP-217ENST00000625216 RPL13AP40429 203 aaKnown RBP7.9□□□□□ -1.14
PNKP-217ENST00000625216 LBHQ53QV2 105 aaPredicted RBP7.9□□□□□ -1.14
PNKP-217ENST00000625216 NAA38Q9BRA0 125 aaKnown RBP7.9□□□□□ -1.14
PNKP-217ENST00000625216 FAM168BA1KXE4 195 aa7.89□□□□□ -1.15
PNKP-217ENST00000625216 TSPAN13O95857 204 aa7.89□□□□□ -1.15
PNKP-217ENST00000625216 KRTAP7-1Q8IUC3 87 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms