RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SND1-IT1Q9HBX3 110 aa14.45□□□□□ -0.1
LIME1-210ENST00000621325 COX6CP09669 75 aa14.44□□□□□ -0.1
LIME1-210ENST00000621325 MALP21145 153 aa14.44□□□□□ -0.1
LIME1-210ENST00000621325 IGKV2-28A0A075B6P5 120 aa14.43□□□□□ -0.1
LIME1-210ENST00000621325 IGKV2D-28P01615 120 aa14.43□□□□□ -0.1
LIME1-210ENST00000621325 ENHOQ6UWT2 76 aa14.43□□□□□ -0.1
LIME1-210ENST00000621325 WFDC10BQ8IUB3 73 aa14.43□□□□□ -0.1
LIME1-210ENST00000621325 PRR34Q9NV39 138 aa14.43□□□□□ -0.1
LIME1-210ENST00000621325 LINC00337Q8N6G1 96 aa14.42□□□□□ -0.1
LIME1-210ENST00000621325 H3BNG1 76 aa14.42□□□□□ -0.1
LIME1-210ENST00000621325 F8WDY8 70 aa14.41□□□□□ -0.1
LIME1-210ENST00000621325 LINC00643Q86TS7 51 aa14.41□□□□□ -0.1
LIME1-210ENST00000621325 C11orf45Q8TAV5 145 aa14.4□□□□□ -0.1
LIME1-210ENST00000621325 LST1O00453 97 aa14.39□□□□□ -0.11
LIME1-210ENST00000621325 DEFB131BA0A096LNP1 70 aa14.38□□□□□ -0.11
LIME1-210ENST00000621325 TMEM258P61165 79 aa14.38□□□□□ -0.11
LIME1-210ENST00000621325 C9orf116Q5BN46 136 aaPredicted RBP14.38□□□□□ -0.11
LIME1-210ENST00000621325 ESRGQ1W209 222 aa14.37□□□□□ -0.11
LIME1-210ENST00000621325 MGAM2Q2M2H8 2515 aa14.37□□□□□ -0.11
LIME1-210ENST00000621325 CRPP02741 224 aa14.37□□□□□ -0.11
LIME1-210ENST00000621325 C6orf223Q8N319 242 aa14.37□□□□□ -0.11
LIME1-210ENST00000621325 TRAV13-2A0A0B4J235 113 aa14.36□□□□□ -0.11
LIME1-210ENST00000621325 ACYP1P07311 99 aa14.36□□□□□ -0.11
LIME1-210ENST00000621325 K7EIL1 84 aa14.34□□□□□ -0.11
LIME1-210ENST00000621325 C10orf25Q5T742 122 aa14.34□□□□□ -0.11
LIME1-210ENST00000621325 HIST1H4AP62805 103 aaKnown RBP14.33□□□□□ -0.12
LIME1-210ENST00000621325 SPAG11BQ08648 103 aa14.33□□□□□ -0.12
LIME1-210ENST00000621325 ATOX1O00244 68 aa14.33□□□□□ -0.12
LIME1-210ENST00000621325 CXCL5P42830 114 aa14.33□□□□□ -0.12
LIME1-210ENST00000621325 C1orf43Q9BWL3 253 aa14.33□□□□□ -0.12
LIME1-210ENST00000621325 UNQ6190/PRO20217Q6UXQ8 127 aa14.32□□□□□ -0.12
LIME1-210ENST00000621325 HUWE1Q7Z6Z7 4374 aaKnown RBP14.31□□□□□ -0.12
LIME1-210ENST00000621325 LINC00336Q6ZUF6 198 aa14.31□□□□□ -0.12
LIME1-210ENST00000621325 FAM218AQ96MZ4 157 aa14.31□□□□□ -0.12
LIME1-210ENST00000621325 UPK3BQ9BT76 320 aa14.31□□□□□ -0.12
LIME1-210ENST00000621325 SMIM11BQ8TCY0 68 aa14.3□□□□□ -0.12
LIME1-210ENST00000621325 RPL28P46779 137 aaKnown RBP14.3□□□□□ -0.12
LIME1-210ENST00000621325 PRR3P79522 188 aaKnown RBP14.3□□□□□ -0.12
LIME1-210ENST00000621325 SDIM1Q6ZPB5 146 aa14.3□□□□□ -0.12
LIME1-210ENST00000621325 PRO0628Q9UI54 55 aa14.3□□□□□ -0.12
LIME1-210ENST00000621325 TM2D3Q9BRN9 247 aa14.29□□□□□ -0.12
LIME1-210ENST00000621325 PKIGQ9Y2B9 76 aa14.29□□□□□ -0.12
LIME1-210ENST00000621325 COX17Q14061 63 aa14.27□□□□□ -0.12
LIME1-210ENST00000621325 KRTAP26-1Q6PEX3 210 aa14.26□□□□□ -0.13
LIME1-210ENST00000621325 RPL18AQ02543 176 aaKnown RBP14.25□□□□□ -0.13
LIME1-210ENST00000621325 Q8NDZ9 215 aa14.25□□□□□ -0.13
LIME1-210ENST00000621325 SERP2Q8N6R1 65 aa14.22□□□□□ -0.13
LIME1-210ENST00000621325 MDFIQ99750 246 aa14.22□□□□□ -0.13
LIME1-210ENST00000621325 HIGD2BQ4VC39 106 aa14.22□□□□□ -0.13
LIME1-210ENST00000621325 LINC01556Q5JQF7 62 aa14.21□□□□□ -0.13
LIME1-210ENST00000621325 TRAV10A0A0B4J240 114 aa14.21□□□□□ -0.14
LIME1-210ENST00000621325 SEC61GP60059 68 aa14.2□□□□□ -0.14
LIME1-210ENST00000621325 Q9HAA7 133 aa14.2□□□□□ -0.14
LIME1-210ENST00000621325 C6orf48Q9UBA6 75 aa14.2□□□□□ -0.14
LIME1-210ENST00000621325 A0A087WVE0 104 aa14.19□□□□□ -0.14
LIME1-210ENST00000621325 A0A087WYN8 130 aa14.19□□□□□ -0.14
LIME1-210ENST00000621325 NDUFC2O95298 119 aa14.17□□□□□ -0.14
LIME1-210ENST00000621325 NCR3O14931 201 aa14.17□□□□□ -0.14
LIME1-210ENST00000621325 IGKV3D-7A0A0C4DH55 119 aa14.16□□□□□ -0.14
LIME1-210ENST00000621325 C15orf56Q8N910 161 aa14.16□□□□□ -0.14
LIME1-210ENST00000621325 LINC00588Q9Y4M8 146 aa14.15□□□□□ -0.14
LIME1-210ENST00000621325 IGKV2D-24A0A075B6R9 120 aa14.15□□□□□ -0.14
LIME1-210ENST00000621325 GVQW2A0A096LPI5 108 aaPredicted RBP14.15□□□□□ -0.14
LIME1-210ENST00000621325 ZNF561-AS1K7EIQ3 104 aa14.15□□□□□ -0.14
LIME1-210ENST00000621325 C22orf24Q9Y442 160 aa14.15□□□□□ -0.14
LIME1-210ENST00000621325 BAALC-AS2P0C853 105 aa14.14□□□□□ -0.15
LIME1-210ENST00000621325 DNAH10OSP0CZ25 163 aa14.13□□□□□ -0.15
LIME1-210ENST00000621325 CAMK2N2Q96S95 79 aa14.13□□□□□ -0.15
LIME1-210ENST00000621325 H0YGX0 51 aa14.12□□□□□ -0.15
LIME1-210ENST00000621325 XAGE1AQ9HD64 81 aa14.12□□□□□ -0.15
LIME1-210ENST00000621325 STAB2Q8WWQ8 2551 aa14.11□□□□□ -0.15
LIME1-210ENST00000621325 FAM236DA0A1B0GTK5 79 aa14.11□□□□□ -0.15
LIME1-210ENST00000621325 LECT2O14960 151 aa14.11□□□□□ -0.15
LIME1-210ENST00000621325 FAM236CP0DP71 79 aa14.11□□□□□ -0.15
LIME1-210ENST00000621325 USP17L23D6RBM5 183 aa14.1□□□□□ -0.15
LIME1-210ENST00000621325 Q6ZRU5 148 aa14.1□□□□□ -0.15
LIME1-210ENST00000621325 MUC7Q8TAX7 377 aa14.09□□□□□ -0.15
LIME1-210ENST00000621325 COL7A1Q02388 2944 aa14.09□□□□□ -0.15
LIME1-210ENST00000621325 DNAH9Q9NYC9 4486 aa14.07□□□□□ -0.16
LIME1-210ENST00000621325 DNAL4O96015 105 aa14.07□□□□□ -0.16
LIME1-210ENST00000621325 S100A7L2Q5SY68 101 aa14.06□□□□□ -0.16
LIME1-210ENST00000621325 SLPIP03973 132 aa14.06□□□□□ -0.16
LIME1-210ENST00000621325 V9GYY9 64 aa14.05□□□□□ -0.16
LIME1-210ENST00000621325 C6orf99Q4VX62 202 aa14.04□□□□□ -0.16
LIME1-210ENST00000621325 A0A0U1RQV1 116 aa14.03□□□□□ -0.16
LIME1-210ENST00000621325 CASC10Q5T4H9 136 aa14.03□□□□□ -0.16
LIME1-210ENST00000621325 DNAH1Q9P2D7 4330 aa14.02□□□□□ -0.16
LIME1-210ENST00000621325 INAFM2P0DMQ5 153 aa14.02□□□□□ -0.17
LIME1-210ENST00000621325 C9orf129Q5T035 196 aaKnown RBP14.02□□□□□ -0.17
LIME1-210ENST00000621325 EPM2AB3EWF7 344 aa14.01□□□□□ -0.17
LIME1-210ENST00000621325 IGLV6-57P01721 117 aa14.01□□□□□ -0.17
LIME1-210ENST00000621325 Q6JHZ5 121 aa14□□□□□ -0.17
LIME1-210ENST00000621325 LINC00846Q9NV44 126 aa14□□□□□ -0.17
LIME1-210ENST00000621325 NDUFC2-KCTD14E9PQ53 114 aa13.99□□□□□ -0.17
LIME1-210ENST00000621325 TRBV10-3A0A0K0K1G6 114 aa13.98□□□□□ -0.17
LIME1-210ENST00000621325 C1orf195Q5TG92 126 aa13.98□□□□□ -0.17
LIME1-210ENST00000621325 SYCNQ0VAF6 134 aa13.98□□□□□ -0.17
LIME1-210ENST00000621325 Q6ZRP5 223 aa13.98□□□□□ -0.17
LIME1-210ENST00000621325 FP248Q71RG6 208 aaPredicted RBP13.98□□□□□ -0.17
LIME1-210ENST00000621325 Q8N814 137 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 157 ms