RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SCO1O75880 301 aa11.25□□□□□ -0.61
CCDC28A-203ENST00000617445 SERF1AO75920 110 aa11.25□□□□□ -0.61
CCDC28A-203ENST00000617445 PRR4Q16378 134 aa11.25□□□□□ -0.61
CCDC28A-203ENST00000617445 RNF213Q63HN8 5207 aa11.25□□□□□ -0.61
CCDC28A-203ENST00000617445 LINC00158P58513 81 aa11.24□□□□□ -0.61
CCDC28A-203ENST00000617445 TMEM126AQ9H061 195 aa11.24□□□□□ -0.61
CCDC28A-203ENST00000617445 LINC00310P59036 64 aa11.23□□□□□ -0.61
CCDC28A-203ENST00000617445 LEPROTL1O95214 131 aa11.22□□□□□ -0.61
CCDC28A-203ENST00000617445 FAM19A1Q7Z5A9 133 aa11.22□□□□□ -0.61
CCDC28A-203ENST00000617445 LPAP08519 4548 aa11.21□□□□□ -0.61
CCDC28A-203ENST00000617445 LINC00587B1AMM8 73 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 TMEM238C9JI98 176 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 M0R378 163 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 ATP6V1G1O75348 118 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 TSPAN13O95857 204 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 HERV-K104P63124 156 aa11.2□□□□□ -0.62
CCDC28A-203ENST00000617445 PRLHP81277 87 aa11.19□□□□□ -0.62
CCDC28A-203ENST00000617445 ANAPC11Q9NYG5 84 aa11.19□□□□□ -0.62
CCDC28A-203ENST00000617445 HSPB8Q9UJY1 196 aa11.19□□□□□ -0.62
CCDC28A-203ENST00000617445 CTAG1AP78358 180 aa11.18□□□□□ -0.62
CCDC28A-203ENST00000617445 Q8NDZ9 215 aa11.18□□□□□ -0.62
CCDC28A-203ENST00000617445 IGKV2D-26A0A0A0MRZ7 120 aa11.17□□□□□ -0.62
CCDC28A-203ENST00000617445 KRTAP13-2Q52LG2 175 aa11.17□□□□□ -0.62
CCDC28A-203ENST00000617445 H0Y8G0 127 aa11.16□□□□□ -0.62
CCDC28A-203ENST00000617445 A0A0U1RRA0 63 aa11.15□□□□□ -0.62
CCDC28A-203ENST00000617445 SMIM13P0DJ93 91 aa11.15□□□□□ -0.62
CCDC28A-203ENST00000617445 FABP4P15090 132 aa11.15□□□□□ -0.62
CCDC28A-203ENST00000617445 MEIG1Q5JSS6 88 aa11.15□□□□□ -0.62
CCDC28A-203ENST00000617445 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
CCDC28A-203ENST00000617445 MYMXA0A1B0GTQ4 84 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BKO60814 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BJP06899 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BOP23527 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BBP33778 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BDP58876 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BCP62807 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST2H2BEQ16778 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 LINC00304Q8N9R0 145 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BHQ93079 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BNQ99877 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 HIST1H2BMQ99879 126 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 MAP1LC3CQ9BXW4 147 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 NDUFA12Q9UI09 145 aa11.14□□□□□ -0.63
CCDC28A-203ENST00000617445 PLNP26678 52 aa11.13□□□□□ -0.63
CCDC28A-203ENST00000617445 BOD1L2Q8IYS8 172 aa11.13□□□□□ -0.63
CCDC28A-203ENST00000617445 MIR7-3HGQ8N6C7 128 aa11.12□□□□□ -0.63
CCDC28A-203ENST00000617445 PRYO14603 147 aa11.11□□□□□ -0.63
CCDC28A-203ENST00000617445 HIGD2AQ9BW72 106 aa11.11□□□□□ -0.63
CCDC28A-203ENST00000617445 KCNQ1DNQ9H478 68 aa11.1□□□□□ -0.63
CCDC28A-203ENST00000617445 ZNF706Q9Y5V0 76 aaPredicted RBP11.1□□□□□ -0.63
CCDC28A-203ENST00000617445 LEPROTO15243 131 aa11.09□□□□□ -0.63
CCDC28A-203ENST00000617445 DPM2O94777 84 aa11.09□□□□□ -0.63
CCDC28A-203ENST00000617445 LINC00337Q8N6G1 96 aa11.09□□□□□ -0.63
CCDC28A-203ENST00000617445 S100A12P80511 92 aa11.08□□□□□ -0.64
CCDC28A-203ENST00000617445 LOC107984156A0A0G2JMH3 177 aa11.07□□□□□ -0.64
CCDC28A-203ENST00000617445 IGKCP01834 107 aa11.07□□□□□ -0.64
CCDC28A-203ENST00000617445 SPRR1AP35321 89 aa11.07□□□□□ -0.64
CCDC28A-203ENST00000617445 ARL17AQ8IVW1 177 aa11.07□□□□□ -0.64
CCDC28A-203ENST00000617445 HERVK_113P61574 105 aa11.06□□□□□ -0.64
CCDC28A-203ENST00000617445 SPRR4Q96PI1 79 aa11.06□□□□□ -0.64
CCDC28A-203ENST00000617445 NCR3O14931 201 aa11.05□□□□□ -0.64
CCDC28A-203ENST00000617445 NMUP48645 174 aa11.05□□□□□ -0.64
CCDC28A-203ENST00000617445 SPAG11AQ6PDA7 123 aa11.05□□□□□ -0.64
CCDC28A-203ENST00000617445 PMCHL2Q9BQD1 86 aa11.05□□□□□ -0.64
CCDC28A-203ENST00000617445 ETDCA0A1B0GVM5 59 aa11.04□□□□□ -0.64
CCDC28A-203ENST00000617445 SYS1-DBNDD2H3BUS1 97 aa11.03□□□□□ -0.64
CCDC28A-203ENST00000617445 J3QQQ9 107 aa11.03□□□□□ -0.64
CCDC28A-203ENST00000617445 TRBV10-3A0A0K0K1G6 114 aa11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 TRBV10-2A0A0K0K1G8 114 aa11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 KRTAP4-16G5E9R7 235 aaPredicted RBP11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 TSPEAR-AS2P59090 65 aa11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 COA6Q5JTJ3 125 aaKnown RBP11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 C3orf22Q8N5N4 141 aa11.02□□□□□ -0.65
CCDC28A-203ENST00000617445 LGALS3P17931 250 aaKnown RBP11□□□□□ -0.65
CCDC28A-203ENST00000617445 S100A1P23297 94 aa11□□□□□ -0.65
CCDC28A-203ENST00000617445 SMCR5Q8TEV8 140 aa11□□□□□ -0.65
CCDC28A-203ENST00000617445 MIEN1Q9BRT3 115 aa11□□□□□ -0.65
CCDC28A-203ENST00000617445 C4orf48Q5BLP8 95 aa10.99□□□□□ -0.65
CCDC28A-203ENST00000617445 PET117Q6UWS5 81 aa10.99□□□□□ -0.65
CCDC28A-203ENST00000617445 RETNLBQ9BQ08 111 aa10.99□□□□□ -0.65
CCDC28A-203ENST00000617445 A0A0U1RQV1 116 aa10.98□□□□□ -0.65
CCDC28A-203ENST00000617445 DDTP30046 118 aa10.98□□□□□ -0.65
CCDC28A-203ENST00000617445 TPRXLQ17RH7 258 aa10.98□□□□□ -0.65
CCDC28A-203ENST00000617445 DAND5Q8N907 189 aa10.98□□□□□ -0.65
CCDC28A-203ENST00000617445 SPANXB1Q9NS25 103 aaPredicted RBP10.98□□□□□ -0.65
CCDC28A-203ENST00000617445 IGLV7-46A0A075B6I9 117 aa10.97□□□□□ -0.65
CCDC28A-203ENST00000617445 NDUFC2O95298 119 aa10.97□□□□□ -0.65
CCDC28A-203ENST00000617445 LINC01545Q5VT33 79 aa10.97□□□□□ -0.65
CCDC28A-203ENST00000617445 E9PLD3 99 aa10.96□□□□□ -0.65
CCDC28A-203ENST00000617445 B5MCH6 92 aa10.95□□□□□ -0.66
CCDC28A-203ENST00000617445 LINC00483Q53H64 154 aa10.95□□□□□ -0.66
CCDC28A-203ENST00000617445 C3orf79P0CE67 100 aa10.93□□□□□ -0.66
CCDC28A-203ENST00000617445 S100A7L2Q5SY68 101 aa10.93□□□□□ -0.66
CCDC28A-203ENST00000617445 CDIP1Q9H305 208 aa10.93□□□□□ -0.66
CCDC28A-203ENST00000617445 IGLV6-57P01721 117 aa10.92□□□□□ -0.66
CCDC28A-203ENST00000617445 FP248Q71RG6 208 aaPredicted RBP10.92□□□□□ -0.66
CCDC28A-203ENST00000617445 Q8NBF4 154 aa10.92□□□□□ -0.66
CCDC28A-203ENST00000617445 SPINK1P00995 79 aa10.91□□□□□ -0.66
CCDC28A-203ENST00000617445 Q6ZRX8 168 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms