RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FXYD4P59646 89 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 RPS25P62851 125 aaKnown RBP2.35□□□□□ -2.03
LINC00540-201ENST00000611481 ZNF90Q03938 601 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 HSD17B12Q53GQ0 312 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 AMMECR1LQ6DCA0 310 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 ENHOQ6UWT2 76 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 TMEM14EPQ6UXP3 125 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 ZNF818PQ6ZRF7 136 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 C1orf64Q8NEQ6 169 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 TP53RKQ96S44 253 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 NPCDR1Q9BY65 106 aa2.35□□□□□ -2.03
LINC00540-201ENST00000611481 TRAV13-1A0A0B4J241 112 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 NCR2O95944 276 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 RHOHQ15669 191 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 NEDD8Q15843 81 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 KHDC3LQ587J8 217 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 EIF5AL1Q6IS14 154 aaKnown RBP2.34□□□□□ -2.03
LINC00540-201ENST00000611481 KRTAP5-7Q6L8G8 165 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 SPINT4Q6UDR6 99 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 COX6B2Q6YFQ2 88 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 C12orf57Q99622 126 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 TCEAL7Q9BRU2 100 aa2.34□□□□□ -2.03
LINC00540-201ENST00000611481 IGLV10-54A0A075B6I4 117 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 PPYP01298 95 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 MT-ND4LP03901 98 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 SLC25A5P05141 298 aaKnown RBP2.33□□□□□ -2.04
LINC00540-201ENST00000611481 RAB5CP51148 216 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 GNGT1P63211 74 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 LYZL1Q6UWQ5 148 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 Q8NDZ9 215 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 BRK1Q8WUW1 75 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 DUSP21Q9H596 190 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 TIMM9Q9Y5J7 89 aa2.33□□□□□ -2.04
LINC00540-201ENST00000611481 MDN1Q9NU22 5596 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 TRAV7A0A075B6U4 112 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 A0A087WWC5 75 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 TRBV27A0A0K0K1C4 114 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 TRBV6-4A0A1B0GX49 114 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 SNRPGP15A8MWD9 76 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 TMEM262E9PQX1 116 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 H3BMG7 143 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 K7ERJ3 54 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 GNRH2O43555 120 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 GPX1P07203 203 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 HIST1H1DP16402 221 aaKnown RBP2.32□□□□□ -2.04
LINC00540-201ENST00000611481 ZNF22P17026 224 aaPredicted RBP2.32□□□□□ -2.04
LINC00540-201ENST00000611481 KRTAP26-1Q6PEX3 210 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 CLPSL2Q6UWE3 100 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 DEFB107AQ8IZN7 70 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 Q8N9L7 120 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 SLC50A1Q9BRV3 221 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 PDCD10Q9BUL8 212 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 KRTAP2-1Q9BYU5 128 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 LINC00474Q9P2X8 69 aa2.32□□□□□ -2.04
LINC00540-201ENST00000611481 TRBV10-2A0A0K0K1G8 114 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 C11orf86A6NJI1 115 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 H7C2G1 150 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 ANGP03950 147 aaKnown RBP2.31□□□□□ -2.04
LINC00540-201ENST00000611481 FXYD2P54710 66 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 SOSTDC1Q6X4U4 206 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 C7orf65Q6ZTY9 151 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 OR5H6Q8NGV6 325 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 PRELID3AQ96N28 172 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 ODF3Q96PU9 254 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 NHP2Q9NX24 153 aaKnown RBP2.31□□□□□ -2.04
LINC00540-201ENST00000611481 TNFSF18Q9UNG2 199 aa2.31□□□□□ -2.04
LINC00540-201ENST00000611481 SYNGR2O43760 224 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 IGLC6P0CF74 106 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 SMIM6P0DI80 62 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 LINC00694P0DN24 101 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 ZNF25P17030 456 aaPredicted RBP2.3□□□□□ -2.04
LINC00540-201ENST00000611481 MRPS10P82664 201 aaKnown RBP2.3□□□□□ -2.04
LINC00540-201ENST00000611481 KRTAP25-1Q3LHN0 102 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 PATE2Q6UY27 113 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 TMEM136Q6ZRR5 245 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 HIGD2AQ9BW72 106 aa2.3□□□□□ -2.04
LINC00540-201ENST00000611481 IGLV4-60A0A075B6I1 120 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 A0A1B0GVG6 124 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 A0A1W2PNN7 141 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 TCRBV3S1A0A5B6 114 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 C9orf170A2RU37 121 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 A8MWV9 139 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 M0R2P5 195 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 RNASE10Q5GAN6 216 aaKnown RBP2.29□□□□□ -2.04
LINC00540-201ENST00000611481 PRR9Q5T870 116 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 LINC00304Q8N9R0 145 aa2.29□□□□□ -2.04
LINC00540-201ENST00000611481 H3BRN7 92 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 UQCRQO14949 82 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 TIMM17BO60830 172 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 TCRAP04437 139 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 METTL15P1P0C7V9 234 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 PCOTHQ58A44 107 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 FP248Q71RG6 208 aaPredicted RBP2.28□□□□□ -2.04
LINC00540-201ENST00000611481 TSKUQ8WUA8 353 aa2.28□□□□□ -2.04
LINC00540-201ENST00000611481 FAM24AA6NFZ4 105 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 ZNF727A8MUV8 499 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 MGST1P10620 155 aaKnown RBP2.27□□□□□ -2.05
LINC00540-201ENST00000611481 AKR1D1P51857 326 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 GNG2P59768 71 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 LSM3P62310 102 aaKnown RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms