RNA–Protein interactions for RNA: ENST00000600841.1

NOTCH3-205, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-205ENST00000600841 PRR26Q8N8Z3 221 aa10.15□□□□□ -0.78
NOTCH3-205ENST00000600841 ZNF625Q96I27 306 aaPredicted RBP10.15□□□□□ -0.78
NOTCH3-205ENST00000600841 HSPB8Q9UJY1 196 aa10.15□□□□□ -0.78
NOTCH3-205ENST00000600841 BCE1O60756 84 aa10.14□□□□□ -0.79
NOTCH3-205ENST00000600841 SND1-IT1Q9HBX3 110 aa10.14□□□□□ -0.79
NOTCH3-205ENST00000600841 TMEM223A0PJW6 202 aa10.13□□□□□ -0.79
NOTCH3-205ENST00000600841 KRTAP1-4P0C5Y4 121 aa10.13□□□□□ -0.79
NOTCH3-205ENST00000600841 IGLV1-50A0A075B6I6 118 aa10.12□□□□□ -0.79
NOTCH3-205ENST00000600841 RPL28P46779 137 aaKnown RBP10.12□□□□□ -0.79
NOTCH3-205ENST00000600841 LRP2P98164 4655 aa10.11□□□□□ -0.79
NOTCH3-205ENST00000600841 RPL24P83731 157 aaKnown RBP10.1□□□□□ -0.79
NOTCH3-205ENST00000600841 VPREB1P12018 145 aa10.09□□□□□ -0.79
NOTCH3-205ENST00000600841 MAP1LC3CQ9BXW4 147 aa10.09□□□□□ -0.79
NOTCH3-205ENST00000600841 IGKV2-28A0A075B6P5 120 aa10.08□□□□□ -0.8
NOTCH3-205ENST00000600841 IGKV2D-28P01615 120 aa10.08□□□□□ -0.8
NOTCH3-205ENST00000600841 RPL13AP40429 203 aaKnown RBP10.08□□□□□ -0.8
NOTCH3-205ENST00000600841 LINC00158P58513 81 aa10.08□□□□□ -0.8
NOTCH3-205ENST00000600841 UBE2AP49459 152 aa10.06□□□□□ -0.8
NOTCH3-205ENST00000600841 A0A0U1RRA0 63 aa10.05□□□□□ -0.8
NOTCH3-205ENST00000600841 PLNP26678 52 aa10.04□□□□□ -0.8
NOTCH3-205ENST00000600841 HERV-K104P63124 156 aa10.04□□□□□ -0.8
NOTCH3-205ENST00000600841 MEIG1Q5JSS6 88 aa10.04□□□□□ -0.8
NOTCH3-205ENST00000600841 Q8NDZ9 215 aa10.04□□□□□ -0.8
NOTCH3-205ENST00000600841 PMCHL2Q9BQD1 86 aa10.04□□□□□ -0.8
NOTCH3-205ENST00000600841 DPM2O94777 84 aa10.03□□□□□ -0.8
NOTCH3-205ENST00000600841 SMIM13P0DJ93 91 aa10.03□□□□□ -0.8
NOTCH3-205ENST00000600841 COA6Q5JTJ3 125 aaKnown RBP10.03□□□□□ -0.8
NOTCH3-205ENST00000600841 KRTAP13-1Q8IUC0 172 aa10.03□□□□□ -0.8
NOTCH3-205ENST00000600841 NDUFA12Q9UI09 145 aa10.03□□□□□ -0.8
NOTCH3-205ENST00000600841 MYMXA0A1B0GTQ4 84 aa10.02□□□□□ -0.81
NOTCH3-205ENST00000600841 LINC00587B1AMM8 73 aa10.02□□□□□ -0.81
NOTCH3-205ENST00000600841 IGKCP01834 107 aa10.02□□□□□ -0.81
NOTCH3-205ENST00000600841 TMEM238C9JI98 176 aa10.01□□□□□ -0.81
NOTCH3-205ENST00000600841 SYS1-DBNDD2H3BUS1 97 aa10.01□□□□□ -0.81
NOTCH3-205ENST00000600841 TMEM126AQ9H061 195 aa10.01□□□□□ -0.81
NOTCH3-205ENST00000600841 HERVK_113P61574 105 aa10□□□□□ -0.81
NOTCH3-205ENST00000600841 FAM19A1Q7Z5A9 133 aa10□□□□□ -0.81
NOTCH3-205ENST00000600841 PLEKHB2Q96CS7 222 aa10□□□□□ -0.81
NOTCH3-205ENST00000600841 M0R378 163 aa9.99□□□□□ -0.81
NOTCH3-205ENST00000600841 LEPROTO15243 131 aa9.99□□□□□ -0.81
NOTCH3-205ENST00000600841 BOD1L2Q8IYS8 172 aa9.99□□□□□ -0.81
NOTCH3-205ENST00000600841 MIR7-3HGQ8N6C7 128 aa9.99□□□□□ -0.81
NOTCH3-205ENST00000600841 CRYGAP11844 174 aa9.98□□□□□ -0.81
NOTCH3-205ENST00000600841 TSPEAR-AS2P59090 65 aa9.98□□□□□ -0.81
NOTCH3-205ENST00000600841 KRTDAPP60985 99 aa9.98□□□□□ -0.81
NOTCH3-205ENST00000600841 PRLHP81277 87 aa9.98□□□□□ -0.81
NOTCH3-205ENST00000600841 S100A6P06703 90 aa9.97□□□□□ -0.81
NOTCH3-205ENST00000600841 PET117Q6UWS5 81 aa9.97□□□□□ -0.81
NOTCH3-205ENST00000600841 A0A087X002 238 aa9.96□□□□□ -0.82
NOTCH3-205ENST00000600841 J3QQQ9 107 aa9.96□□□□□ -0.82
NOTCH3-205ENST00000600841 C3orf79P0CE67 100 aa9.96□□□□□ -0.82
NOTCH3-205ENST00000600841 S100A2P29034 98 aa9.95□□□□□ -0.82
NOTCH3-205ENST00000600841 NCR3O14931 201 aa9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 LGALS3P17931 250 aaKnown RBP9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 NMUP48645 174 aa9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 LINC01545Q5VT33 79 aa9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 TYMSOSQ8TAI1 123 aa9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 ANAPC11Q9NYG5 84 aa9.94□□□□□ -0.82
NOTCH3-205ENST00000600841 IGKV2D-26A0A0A0MRZ7 120 aa9.93□□□□□ -0.82
NOTCH3-205ENST00000600841 C20orf202A1L168 122 aa9.93□□□□□ -0.82
NOTCH3-205ENST00000600841 FAM229BQ4G0N7 80 aa9.93□□□□□ -0.82
NOTCH3-205ENST00000600841 PRYO14603 147 aa9.91□□□□□ -0.82
NOTCH3-205ENST00000600841 HIST3H2BBQ8N257 126 aa9.91□□□□□ -0.82
NOTCH3-205ENST00000600841 DAND5Q8N907 189 aa9.91□□□□□ -0.82
NOTCH3-205ENST00000600841 HIGD2AQ9BW72 106 aa9.91□□□□□ -0.82
NOTCH3-205ENST00000600841 RNF213Q63HN8 5207 aa9.91□□□□□ -0.82
NOTCH3-205ENST00000600841 LPAP08519 4548 aa9.9□□□□□ -0.82
NOTCH3-205ENST00000600841 LOC107984156A0A0G2JMH3 177 aa9.89□□□□□ -0.83
NOTCH3-205ENST00000600841 KRTAP13-2Q52LG2 175 aa9.89□□□□□ -0.83
NOTCH3-205ENST00000600841 ARL17AQ8IVW1 177 aa9.89□□□□□ -0.83
NOTCH3-205ENST00000600841 KCNQ1DNQ9H478 68 aa9.89□□□□□ -0.83
NOTCH3-205ENST00000600841 E9PLD3 99 aa9.88□□□□□ -0.83
NOTCH3-205ENST00000600841 TSPAN13O95857 204 aa9.88□□□□□ -0.83
NOTCH3-205ENST00000600841 MIEN1Q9BRT3 115 aa9.88□□□□□ -0.83
NOTCH3-205ENST00000600841 TRBV10-3A0A0K0K1G6 114 aa9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 SNRPEP62304 92 aaKnown RBP9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 S100A12P80511 92 aa9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 PRR4Q16378 134 aa9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 LINC00337Q8N6G1 96 aa9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 HIST1H2BLQ99880 126 aa9.87□□□□□ -0.83
NOTCH3-205ENST00000600841 SPRR1AP35321 89 aa9.86□□□□□ -0.83
NOTCH3-205ENST00000600841 TRBV10-2A0A0K0K1G8 114 aa9.85□□□□□ -0.83
NOTCH3-205ENST00000600841 ETDCA0A1B0GVM5 59 aa9.85□□□□□ -0.83
NOTCH3-205ENST00000600841 ATOH7Q8N100 152 aa9.85□□□□□ -0.83
NOTCH3-205ENST00000600841 A0A0J9YXY3 114 aa9.84□□□□□ -0.83
NOTCH3-205ENST00000600841 AKR1D1P51857 326 aa9.84□□□□□ -0.83
NOTCH3-205ENST00000600841 SPANXB1Q9NS25 103 aaPredicted RBP9.84□□□□□ -0.83
NOTCH3-205ENST00000600841 ZNF706Q9Y5V0 76 aaPredicted RBP9.84□□□□□ -0.83
NOTCH3-205ENST00000600841 KRTAP4-16G5E9R7 235 aaPredicted RBP9.83□□□□□ -0.84
NOTCH3-205ENST00000600841 DDTP30046 118 aa9.83□□□□□ -0.84
NOTCH3-205ENST00000600841 LINC00304Q8N9R0 145 aa9.83□□□□□ -0.84
NOTCH3-205ENST00000600841 SPRR4Q96PI1 79 aa9.83□□□□□ -0.84
NOTCH3-205ENST00000600841 NDUFC2O95298 119 aa9.82□□□□□ -0.84
NOTCH3-205ENST00000600841 ADAMTSL4-AS1Q5T5F5 129 aa9.81□□□□□ -0.84
NOTCH3-205ENST00000600841 C5orf52A6NGY3 159 aa9.8□□□□□ -0.84
NOTCH3-205ENST00000600841 ZNF815PA8K554 130 aa9.8□□□□□ -0.84
NOTCH3-205ENST00000600841 NPC2P61916 151 aa9.8□□□□□ -0.84
NOTCH3-205ENST00000600841 S100A7L2Q5SY68 101 aa9.8□□□□□ -0.84
NOTCH3-205ENST00000600841 SMCR5Q8TEV8 140 aa9.8□□□□□ -0.84
NOTCH3-205ENST00000600841 SOSTDC1Q6X4U4 206 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms