RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 C18orf32Q8TCD1 76 aa10.21□□□□□ -0.77
SHKBP1-223ENST00000600552 HIGD2AQ9BW72 106 aa10.21□□□□□ -0.77
SHKBP1-223ENST00000600552 M0R378 163 aa10.2□□□□□ -0.78
SHKBP1-223ENST00000600552 COX17Q14061 63 aa10.19□□□□□ -0.78
SHKBP1-223ENST00000600552 RHEBQ15382 184 aa10.19□□□□□ -0.78
SHKBP1-223ENST00000600552 C3orf22Q8N5N4 141 aa10.19□□□□□ -0.78
SHKBP1-223ENST00000600552 CDIP1Q9H305 208 aa10.19□□□□□ -0.78
SHKBP1-223ENST00000600552 IGLV7-46A0A075B6I9 117 aa10.18□□□□□ -0.78
SHKBP1-223ENST00000600552 PLEKHB2Q96CS7 222 aa10.18□□□□□ -0.78
SHKBP1-223ENST00000600552 CHTOPQ9Y3Y2 248 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-223ENST00000600552 ATP6V1G1O75348 118 aa10.16□□□□□ -0.78
SHKBP1-223ENST00000600552 C10orf91Q5T1B1 145 aa10.14□□□□□ -0.79
SHKBP1-223ENST00000600552 NCR3O14931 201 aa10.12□□□□□ -0.79
SHKBP1-223ENST00000600552 SMIM13P0DJ93 91 aa10.12□□□□□ -0.79
SHKBP1-223ENST00000600552 MEIG1Q5JSS6 88 aa10.12□□□□□ -0.79
SHKBP1-223ENST00000600552 SFTA2Q6UW10 78 aa10.12□□□□□ -0.79
SHKBP1-223ENST00000600552 APOC3P02656 99 aa10.11□□□□□ -0.79
SHKBP1-223ENST00000600552 C4orf48Q5BLP8 95 aa10.11□□□□□ -0.79
SHKBP1-223ENST00000600552 BOD1L2Q8IYS8 172 aa10.11□□□□□ -0.79
SHKBP1-223ENST00000600552 PPDPFQ9H3Y8 114 aa10.11□□□□□ -0.79
SHKBP1-223ENST00000600552 TMEM223A0PJW6 202 aa10.1□□□□□ -0.79
SHKBP1-223ENST00000600552 SPRR4Q96PI1 79 aa10.1□□□□□ -0.79
SHKBP1-223ENST00000600552 DAND5Q8N907 189 aa10.09□□□□□ -0.79
SHKBP1-223ENST00000600552 TPRXLQ17RH7 258 aa10.08□□□□□ -0.8
SHKBP1-223ENST00000600552 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
SHKBP1-223ENST00000600552 H0Y8G0 127 aa10.07□□□□□ -0.8
SHKBP1-223ENST00000600552 MIR7-3HGQ8N6C7 128 aa10.07□□□□□ -0.8
SHKBP1-223ENST00000600552 SMCR5Q8TEV8 140 aa10.07□□□□□ -0.8
SHKBP1-223ENST00000600552 ZNF706Q9Y5V0 76 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-223ENST00000600552 FAT4Q6V0I7 4981 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 ETDCA0A1B0GVM5 59 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 PRYO14603 147 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 SPAG11AQ6PDA7 123 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 Q8NBF4 154 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 MUC17Q685J3 4493 aa10.05□□□□□ -0.8
SHKBP1-223ENST00000600552 TRAV12-1A0A0B4J245 112 aa10.04□□□□□ -0.8
SHKBP1-223ENST00000600552 KRTAP9-2Q9BYQ4 174 aa10.04□□□□□ -0.8
SHKBP1-223ENST00000600552 SNAPINO95295 136 aa10.03□□□□□ -0.8
SHKBP1-223ENST00000600552 NDUFA5Q16718 116 aa10.03□□□□□ -0.8
SHKBP1-223ENST00000600552 FAM19A2Q8N3H0 131 aa10.03□□□□□ -0.8
SHKBP1-223ENST00000600552 LINC00337Q8N6G1 96 aa10.03□□□□□ -0.8
SHKBP1-223ENST00000600552 CHCHD1Q96BP2 118 aaKnown RBP10.03□□□□□ -0.8
SHKBP1-223ENST00000600552 SVBPQ8N300 66 aa10.02□□□□□ -0.81
SHKBP1-223ENST00000600552 NDUFA12Q9UI09 145 aa10.02□□□□□ -0.81
SHKBP1-223ENST00000600552 TRBV10-3A0A0K0K1G6 114 aa10.01□□□□□ -0.81
SHKBP1-223ENST00000600552 GAGE2AQ6NT46 116 aa10.01□□□□□ -0.81
SHKBP1-223ENST00000600552 MYMXA0A1B0GTQ4 84 aa10□□□□□ -0.81
SHKBP1-223ENST00000600552 HERV-K104P63124 156 aa10□□□□□ -0.81
SHKBP1-223ENST00000600552 CTAG1AP78358 180 aa10□□□□□ -0.81
SHKBP1-223ENST00000600552 KCNQ1DNQ9H478 68 aa10□□□□□ -0.81
SHKBP1-223ENST00000600552 HSBP1O75506 76 aa9.99□□□□□ -0.81
SHKBP1-223ENST00000600552 S100A12P80511 92 aa9.99□□□□□ -0.81
SHKBP1-223ENST00000600552 LCE2AQ5TA79 106 aaPredicted RBP9.99□□□□□ -0.81
SHKBP1-223ENST00000600552 MAP1LC3CQ9BXW4 147 aa9.99□□□□□ -0.81
SHKBP1-223ENST00000600552 IGLV9-49A0A0B4J1Y8 123 aa9.98□□□□□ -0.81
SHKBP1-223ENST00000600552 LINC00587B1AMM8 73 aa9.97□□□□□ -0.81
SHKBP1-223ENST00000600552 SPRR1AP35321 89 aa9.97□□□□□ -0.81
SHKBP1-223ENST00000600552 FP248Q71RG6 208 aaPredicted RBP9.96□□□□□ -0.82
SHKBP1-223ENST00000600552 ERC2-IT1O76042 136 aa9.95□□□□□ -0.82
SHKBP1-223ENST00000600552 TSPEAR-AS2P59090 65 aa9.95□□□□□ -0.82
SHKBP1-223ENST00000600552 MOBPQ13875 183 aa9.95□□□□□ -0.82
SHKBP1-223ENST00000600552 B5MCH6 92 aa9.94□□□□□ -0.82
SHKBP1-223ENST00000600552 KRTAP4-16G5E9R7 235 aaPredicted RBP9.94□□□□□ -0.82
SHKBP1-223ENST00000600552 DDTP30046 118 aa9.94□□□□□ -0.82
SHKBP1-223ENST00000600552 YPEL4Q96NS1 127 aa9.94□□□□□ -0.82
SHKBP1-223ENST00000600552 LEPROTO15243 131 aa9.93□□□□□ -0.82
SHKBP1-223ENST00000600552 SPINK1P00995 79 aa9.93□□□□□ -0.82
SHKBP1-223ENST00000600552 LEPROTL1O95214 131 aa9.92□□□□□ -0.82
SHKBP1-223ENST00000600552 KRTAP13-3Q3SY46 172 aa9.92□□□□□ -0.82
SHKBP1-223ENST00000600552 PMCHL2Q9BQD1 86 aa9.92□□□□□ -0.82
SHKBP1-223ENST00000600552 FABP4P15090 132 aa9.91□□□□□ -0.82
SHKBP1-223ENST00000600552 LINC00483Q53H64 154 aa9.91□□□□□ -0.82
SHKBP1-223ENST00000600552 S100A7L2Q5SY68 101 aa9.91□□□□□ -0.82
SHKBP1-223ENST00000600552 MIEN1Q9BRT3 115 aa9.91□□□□□ -0.82
SHKBP1-223ENST00000600552 J3QQQ9 107 aa9.9□□□□□ -0.82
SHKBP1-223ENST00000600552 NPC2P61916 151 aa9.9□□□□□ -0.82
SHKBP1-223ENST00000600552 SERF1AO75920 110 aa9.89□□□□□ -0.83
SHKBP1-223ENST00000600552 TRGC2P03986 189 aa9.89□□□□□ -0.83
SHKBP1-223ENST00000600552 LGALS3P17931 250 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-223ENST00000600552 HERVK_113P61574 105 aa9.88□□□□□ -0.83
SHKBP1-223ENST00000600552 C9orf153Q5TBE3 101 aa9.88□□□□□ -0.83
SHKBP1-223ENST00000600552 Q9BRP9 147 aa9.88□□□□□ -0.83
SHKBP1-223ENST00000600552 TRBV10-2A0A0K0K1G8 114 aa9.87□□□□□ -0.83
SHKBP1-223ENST00000600552 DPM2O94777 84 aa9.87□□□□□ -0.83
SHKBP1-223ENST00000600552 PLNP26678 52 aa9.87□□□□□ -0.83
SHKBP1-223ENST00000600552 SPANXB1Q9NS25 103 aaPredicted RBP9.87□□□□□ -0.83
SHKBP1-223ENST00000600552 Q6ZRX8 168 aa9.86□□□□□ -0.83
SHKBP1-223ENST00000600552 SSBP3-AS1Q7Z2R9 100 aa9.86□□□□□ -0.83
SHKBP1-223ENST00000600552 ASB16-AS1Q495Z4 193 aa9.85□□□□□ -0.83
SHKBP1-223ENST00000600552 HSPB8Q9UJY1 196 aa9.85□□□□□ -0.83
SHKBP1-223ENST00000600552 LOC107984156A0A0G2JMH3 177 aa9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 IGKCP01834 107 aa9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 LINC00310P59036 64 aa9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 SEC61BP60468 96 aaKnown RBP9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 ARL17AQ8IVW1 177 aa9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 Q8N377 158 aa9.84□□□□□ -0.83
SHKBP1-223ENST00000600552 TRAV23DV6A0A075B6W5 121 aa9.83□□□□□ -0.84
SHKBP1-223ENST00000600552 SLC25A20O43772 301 aa9.83□□□□□ -0.84
SHKBP1-223ENST00000600552 NMUP48645 174 aa9.83□□□□□ -0.84
SHKBP1-223ENST00000600552 IGLV6-57P01721 117 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms