RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 MAP1LC3CQ9BXW4 147 aa8.6□□□□□ -1.03
LIG1-218ENST00000599322 LRP2P98164 4655 aa8.58□□□□□ -1.04
LIG1-218ENST00000599322 IGLV1-50A0A075B6I6 118 aa8.58□□□□□ -1.04
LIG1-218ENST00000599322 MYMXA0A1B0GTQ4 84 aa8.58□□□□□ -1.04
LIG1-218ENST00000599322 RPL13AP40429 203 aaKnown RBP8.58□□□□□ -1.04
LIG1-218ENST00000599322 UBE2AP49459 152 aa8.58□□□□□ -1.04
LIG1-218ENST00000599322 DPM2O94777 84 aa8.57□□□□□ -1.04
LIG1-218ENST00000599322 PLEKHB2Q96CS7 222 aa8.57□□□□□ -1.04
LIG1-218ENST00000599322 A0A0U1RRA0 63 aa8.56□□□□□ -1.04
LIG1-218ENST00000599322 NDUFA12Q9UI09 145 aa8.56□□□□□ -1.04
LIG1-218ENST00000599322 IGKV2-28A0A075B6P5 120 aa8.55□□□□□ -1.04
LIG1-218ENST00000599322 SCO1O75880 301 aa8.55□□□□□ -1.04
LIG1-218ENST00000599322 IGKV2D-28P01615 120 aa8.55□□□□□ -1.04
LIG1-218ENST00000599322 S100A12P80511 92 aa8.55□□□□□ -1.04
LIG1-218ENST00000599322 PRR26Q8N8Z3 221 aa8.55□□□□□ -1.04
LIG1-218ENST00000599322 LEPROTO15243 131 aa8.54□□□□□ -1.04
LIG1-218ENST00000599322 IGKCP01834 107 aa8.54□□□□□ -1.04
LIG1-218ENST00000599322 SMIM13P0DJ93 91 aa8.54□□□□□ -1.04
LIG1-218ENST00000599322 VPREB1P12018 145 aa8.54□□□□□ -1.04
LIG1-218ENST00000599322 LGALS3P17931 250 aaKnown RBP8.53□□□□□ -1.04
LIG1-218ENST00000599322 M0R378 163 aa8.52□□□□□ -1.05
LIG1-218ENST00000599322 LINC00310P59036 64 aa8.52□□□□□ -1.05
LIG1-218ENST00000599322 J3QQQ9 107 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 NMUP48645 174 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 FAM19A1Q7Z5A9 133 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 BOD1L2Q8IYS8 172 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 MIR7-3HGQ8N6C7 128 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 MIEN1Q9BRT3 115 aa8.51□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BKO60814 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BJP06899 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BOP23527 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BBP33778 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BDP58876 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BCP62807 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST2H2BEQ16778 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BHQ93079 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BNQ99877 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 HIST1H2BMQ99879 126 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 PMCHL2Q9BQD1 86 aa8.5□□□□□ -1.05
LIG1-218ENST00000599322 CRYGAP11844 174 aa8.49□□□□□ -1.05
LIG1-218ENST00000599322 TMEM126AQ9H061 195 aa8.49□□□□□ -1.05
LIG1-218ENST00000599322 RNF213Q63HN8 5207 aa8.48□□□□□ -1.05
LIG1-218ENST00000599322 IGKV2D-26A0A0A0MRZ7 120 aa8.48□□□□□ -1.05
LIG1-218ENST00000599322 KRTAP1-4P0C5Y4 121 aa8.48□□□□□ -1.05
LIG1-218ENST00000599322 SYS1-DBNDD2H3BUS1 97 aa8.47□□□□□ -1.05
LIG1-218ENST00000599322 TMEM238C9JI98 176 aa8.46□□□□□ -1.06
LIG1-218ENST00000599322 PRLHP81277 87 aa8.45□□□□□ -1.06
LIG1-218ENST00000599322 PET117Q6UWS5 81 aa8.45□□□□□ -1.06
LIG1-218ENST00000599322 TYMSOSQ8TAI1 123 aa8.45□□□□□ -1.06
LIG1-218ENST00000599322 E9PLD3 99 aa8.44□□□□□ -1.06
LIG1-218ENST00000599322 PRYO14603 147 aa8.44□□□□□ -1.06
LIG1-218ENST00000599322 NCR3O14931 201 aa8.44□□□□□ -1.06
LIG1-218ENST00000599322 TMA7Q9Y2S6 64 aaKnown RBP8.44□□□□□ -1.06
LIG1-218ENST00000599322 ETDCA0A1B0GVM5 59 aa8.43□□□□□ -1.06
LIG1-218ENST00000599322 C20orf202A1L168 122 aa8.43□□□□□ -1.06
LIG1-218ENST00000599322 TSPEAR-AS2P59090 65 aa8.43□□□□□ -1.06
LIG1-218ENST00000599322 FAM229BQ4G0N7 80 aa8.43□□□□□ -1.06
LIG1-218ENST00000599322 HIGD2AQ9BW72 106 aa8.43□□□□□ -1.06
LIG1-218ENST00000599322 AKR1D1P51857 326 aa8.42□□□□□ -1.06
LIG1-218ENST00000599322 KRTAP13-1Q8IUC0 172 aa8.42□□□□□ -1.06
LIG1-218ENST00000599322 ZNF706Q9Y5V0 76 aaPredicted RBP8.42□□□□□ -1.06
LIG1-218ENST00000599322 LOC105371267A0A1B0GV96 52 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 KRTDAPP60985 99 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 S100A7L2Q5SY68 101 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 DAND5Q8N907 189 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 Q8NDZ9 215 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 CBY1Q9Y3M2 126 aa8.41□□□□□ -1.06
LIG1-218ENST00000599322 TRBV10-2A0A0K0K1G8 114 aa8.4□□□□□ -1.06
LIG1-218ENST00000599322 LINC01545Q5VT33 79 aa8.4□□□□□ -1.06
LIG1-218ENST00000599322 LINC00337Q8N6G1 96 aa8.4□□□□□ -1.06
LIG1-218ENST00000599322 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
LIG1-218ENST00000599322 LOC107984156A0A0G2JMH3 177 aa8.39□□□□□ -1.07
LIG1-218ENST00000599322 TRBV10-3A0A0K0K1G6 114 aa8.39□□□□□ -1.07
LIG1-218ENST00000599322 DDTP30046 118 aa8.39□□□□□ -1.07
LIG1-218ENST00000599322 COA6Q5JTJ3 125 aaKnown RBP8.39□□□□□ -1.07
LIG1-218ENST00000599322 ARL17AQ8IVW1 177 aa8.39□□□□□ -1.07
LIG1-218ENST00000599322 KCNQ1DNQ9H478 68 aa8.39□□□□□ -1.07
LIG1-218ENST00000599322 A0A0J9YXY3 114 aa8.38□□□□□ -1.07
LIG1-218ENST00000599322 NDUFC2O95298 119 aa8.38□□□□□ -1.07
LIG1-218ENST00000599322 C3orf79P0CE67 100 aa8.38□□□□□ -1.07
LIG1-218ENST00000599322 A0A087X002 238 aa8.37□□□□□ -1.07
LIG1-218ENST00000599322 TSPAN13O95857 204 aa8.37□□□□□ -1.07
LIG1-218ENST00000599322 ANAPC11Q9NYG5 84 aa8.37□□□□□ -1.07
LIG1-218ENST00000599322 LPAP08519 4548 aa8.36□□□□□ -1.07
LIG1-218ENST00000599322 ZNF815PA8K554 130 aa8.36□□□□□ -1.07
LIG1-218ENST00000599322 HINT1P49773 126 aaPredicted RBP8.36□□□□□ -1.07
LIG1-218ENST00000599322 PRR4Q16378 134 aa8.36□□□□□ -1.07
LIG1-218ENST00000599322 TIMM17BO60830 172 aa8.35□□□□□ -1.07
LIG1-218ENST00000599322 NPC2P61916 151 aa8.35□□□□□ -1.07
LIG1-218ENST00000599322 S100A2P29034 98 aa8.34□□□□□ -1.07
LIG1-218ENST00000599322 SPRR1AP35321 89 aa8.34□□□□□ -1.07
LIG1-218ENST00000599322 JOSD1Q15040 202 aaPredicted RBP8.34□□□□□ -1.07
LIG1-218ENST00000599322 SCGB1D4Q6XE38 83 aa8.34□□□□□ -1.07
LIG1-218ENST00000599322 SMCR5Q8TEV8 140 aa8.34□□□□□ -1.07
LIG1-218ENST00000599322 COPS9Q8WXC6 57 aa8.34□□□□□ -1.07
LIG1-218ENST00000599322 C4orf48Q5BLP8 95 aa8.33□□□□□ -1.08
LIG1-218ENST00000599322 LINC00304Q8N9R0 145 aa8.33□□□□□ -1.08
LIG1-218ENST00000599322 ADAMTSL4-AS1Q5T5F5 129 aa8.32□□□□□ -1.08
LIG1-218ENST00000599322 OR13C6PQ8NH95 151 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms