RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 KRTAP29-1A8MX34 341 aaPredicted RBP7.37□□□□□ -1.23
LIG3-213ENST00000590630 DPM2O94777 84 aa7.37□□□□□ -1.23
LIG3-213ENST00000590630 ERG28Q9UKR5 140 aa7.37□□□□□ -1.23
LIG3-213ENST00000590630 SCGB1D1O95968 90 aa7.36□□□□□ -1.23
LIG3-213ENST00000590630 PFN2P35080 140 aa7.36□□□□□ -1.23
LIG3-213ENST00000590630 SERTAD4-AS1Q5TG53 156 aa7.36□□□□□ -1.23
LIG3-213ENST00000590630 PSORS1C2Q9UIG4 136 aa7.36□□□□□ -1.23
LIG3-213ENST00000590630 LRP1Q07954 4544 aaKnown RBP7.35□□□□□ -1.23
LIG3-213ENST00000590630 OXTP01178 125 aa7.35□□□□□ -1.23
LIG3-213ENST00000590630 IGKCP01834 107 aa7.35□□□□□ -1.23
LIG3-213ENST00000590630 COL5A1-AS1Q5SY13 56 aa7.35□□□□□ -1.23
LIG3-213ENST00000590630 TP73-AS1Q9UF72 201 aa7.35□□□□□ -1.23
LIG3-213ENST00000590630 PLA2G2DQ9UNK4 145 aa7.35□□□□□ -1.23
LIG3-213ENST00000590630 SYS1-DBNDD2H3BUS1 97 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 HERVK_113P61574 105 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 UBE2BP63146 152 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 SPINK6Q6UWN8 80 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 PMCHL2Q9BQD1 86 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 C22orf24Q9Y442 160 aa7.34□□□□□ -1.23
LIG3-213ENST00000590630 J3QL48 77 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 LEPROTO15243 131 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 HERV-K104P63124 156 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 C1orf137Q5JT78 98 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 PLEKHB2Q96CS7 222 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 SND1-IT1Q9HBX3 110 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 NDUFA12Q9UI09 145 aa7.33□□□□□ -1.24
LIG3-213ENST00000590630 HERC1Q15751 4861 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 IGLV5-37A0A075B6J1 123 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 MYMXA0A1B0GTQ4 84 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 SRSF9Q13242 221 aaKnown RBP eCLIP7.32□□□□□ -1.24
LIG3-213ENST00000590630 PET117Q6UWS5 81 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 MRPL55Q7Z7F7 128 aaKnown RBP7.32□□□□□ -1.24
LIG3-213ENST00000590630 KRTAP11-1Q8IUC1 163 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 FAT3Q8TDW7 4589 aa7.32□□□□□ -1.24
LIG3-213ENST00000590630 PCP4P48539 62 aa7.31□□□□□ -1.24
LIG3-213ENST00000590630 LINC00158P58513 81 aa7.31□□□□□ -1.24
LIG3-213ENST00000590630 LINC01545Q5VT33 79 aa7.31□□□□□ -1.24
LIG3-213ENST00000590630 NKAPP1Q8N9T2 125 aa7.31□□□□□ -1.24
LIG3-213ENST00000590630 VAMP8Q9BV40 100 aa7.31□□□□□ -1.24
LIG3-213ENST00000590630 J3QQQ9 107 aa7.3□□□□□ -1.24
LIG3-213ENST00000590630 IGLV7-43P04211 117 aa7.3□□□□□ -1.24
LIG3-213ENST00000590630 NMUP48645 174 aa7.3□□□□□ -1.24
LIG3-213ENST00000590630 TSPEAR-AS2P59090 65 aa7.3□□□□□ -1.24
LIG3-213ENST00000590630 MEIG1Q5JSS6 88 aa7.3□□□□□ -1.24
LIG3-213ENST00000590630 C20orf202A1L168 122 aa7.29□□□□□ -1.24
LIG3-213ENST00000590630 C3orf79P0CE67 100 aa7.29□□□□□ -1.24
LIG3-213ENST00000590630 LGALS3P17931 250 aaKnown RBP7.29□□□□□ -1.24
LIG3-213ENST00000590630 RPL24P83731 157 aaKnown RBP7.29□□□□□ -1.24
LIG3-213ENST00000590630 REG3GQ6UW15 175 aa7.29□□□□□ -1.24
LIG3-213ENST00000590630 UQCR10Q9UDW1 63 aa7.29□□□□□ -1.24
LIG3-213ENST00000590630 A0A0U1RRA0 63 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 E9PLD3 99 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 SMIM13P0DJ93 91 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 VPREB1P12018 145 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 KRTDAPP60985 99 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 LINC00167Q96N53 147 aa7.28□□□□□ -1.24
LIG3-213ENST00000590630 GAGE10A6NGK3 116 aa7.26□□□□□ -1.25
LIG3-213ENST00000590630 RPL37AP8A6NKH3 93 aa7.26□□□□□ -1.25
LIG3-213ENST00000590630 MIR7-3HGQ8N6C7 128 aa7.26□□□□□ -1.25
LIG3-213ENST00000590630 DIRC1Q969H9 104 aa7.26□□□□□ -1.25
LIG3-213ENST00000590630 LINC01600Q96MT4 127 aa7.25□□□□□ -1.25
LIG3-213ENST00000590630 H0Y9J4 135 aa7.24□□□□□ -1.25
LIG3-213ENST00000590630 BCE1O60756 84 aa7.24□□□□□ -1.25
LIG3-213ENST00000590630 Q8NDZ9 215 aa7.24□□□□□ -1.25
LIG3-213ENST00000590630 IGLV1-50A0A075B6I6 118 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 IGKV2-28A0A075B6P5 120 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 ZNF861PO60384 105 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 IGKV2D-28P01615 120 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 MT1HL1P0DM35 61 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 UBE2V1Q13404 147 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 BOD1L2Q8IYS8 172 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 PAM16Q9Y3D7 125 aa7.23□□□□□ -1.25
LIG3-213ENST00000590630 LOC107984156A0A0G2JMH3 177 aa7.22□□□□□ -1.25
LIG3-213ENST00000590630 RPL28P46779 137 aaKnown RBP7.22□□□□□ -1.25
LIG3-213ENST00000590630 SPATA45Q537H7 98 aa7.22□□□□□ -1.25
LIG3-213ENST00000590630 ARL17AQ8IVW1 177 aa7.22□□□□□ -1.25
LIG3-213ENST00000590630 IGKV2D-26A0A0A0MRZ7 120 aa7.21□□□□□ -1.26
LIG3-213ENST00000590630 A0A0J9YXY3 114 aa7.21□□□□□ -1.26
LIG3-213ENST00000590630 M0R378 163 aa7.21□□□□□ -1.26
LIG3-213ENST00000590630 DAND5Q8N907 189 aa7.21□□□□□ -1.26
LIG3-213ENST00000590630 BATFQ16520 125 aa7.2□□□□□ -1.26
LIG3-213ENST00000590630 TNXBP22105 4242 aa7.19□□□□□ -1.26
LIG3-213ENST00000590630 ZNF815PA8K554 130 aa7.19□□□□□ -1.26
LIG3-213ENST00000590630 C21orf62-AS1Q17RA5 79 aa7.19□□□□□ -1.26
LIG3-213ENST00000590630 TMEM126AQ9H061 195 aa7.19□□□□□ -1.26
LIG3-213ENST00000590630 NCR3O14931 201 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 TIMM17BO60830 172 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 UBE2AP49459 152 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 ADAMTSL4-AS1Q5T5F5 129 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 KRTAP13-1Q8IUC0 172 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 ATOH7Q8N100 152 aa7.18□□□□□ -1.26
LIG3-213ENST00000590630 TRBV10-2A0A0K0K1G8 114 aa7.17□□□□□ -1.26
LIG3-213ENST00000590630 TMEM238C9JI98 176 aa7.17□□□□□ -1.26
LIG3-213ENST00000590630 NDUFC2O95298 119 aa7.17□□□□□ -1.26
LIG3-213ENST00000590630 KRTAP10-8P60410 259 aa7.17□□□□□ -1.26
LIG3-213ENST00000590630 KRTAP1-4P0C5Y4 121 aa7.16□□□□□ -1.26
LIG3-213ENST00000590630 LITAFQ99732 161 aa7.16□□□□□ -1.26
LIG3-213ENST00000590630 TTTY13Q9BZ97 58 aa7.16□□□□□ -1.26
LIG3-213ENST00000590630 SPANXB1Q9NS25 103 aaPredicted RBP7.16□□□□□ -1.26
LIG3-213ENST00000590630 PRYO14603 147 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms