RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 COX17Q14061 63 aa11.17□□□□□ -0.62
TRAF4-216ENST00000586813 Q8NDZ9 215 aa11.17□□□□□ -0.62
TRAF4-216ENST00000586813 FABP9Q0Z7S8 132 aa11.16□□□□□ -0.62
TRAF4-216ENST00000586813 IGLV7-46A0A075B6I9 117 aa11.15□□□□□ -0.62
TRAF4-216ENST00000586813 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
TRAF4-216ENST00000586813 ZNF625Q96I27 306 aaPredicted RBP11.15□□□□□ -0.62
TRAF4-216ENST00000586813 CBLN2Q8IUK8 224 aa11.13□□□□□ -0.63
TRAF4-216ENST00000586813 C3orf22Q8N5N4 141 aa11.13□□□□□ -0.63
TRAF4-216ENST00000586813 SFTA2Q6UW10 78 aa11.12□□□□□ -0.63
TRAF4-216ENST00000586813 URB1-AS1Q96HZ7 61 aa11.12□□□□□ -0.63
TRAF4-216ENST00000586813 C11orf86A6NJI1 115 aa11.11□□□□□ -0.63
TRAF4-216ENST00000586813 HBDP02042 147 aa11.11□□□□□ -0.63
TRAF4-216ENST00000586813 HIGD2AQ9BW72 106 aa11.11□□□□□ -0.63
TRAF4-216ENST00000586813 LINC00614P0C842 121 aa11.09□□□□□ -0.63
TRAF4-216ENST00000586813 PMCHL1Q16048 86 aa11.09□□□□□ -0.63
TRAF4-216ENST00000586813 TMEM170BQ5T4T1 132 aa11.09□□□□□ -0.63
TRAF4-216ENST00000586813 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
TRAF4-216ENST00000586813 PPDPFQ9H3Y8 114 aa11.08□□□□□ -0.64
TRAF4-216ENST00000586813 TRAPPC1Q9Y5R8 145 aa11.08□□□□□ -0.64
TRAF4-216ENST00000586813 BAGE3Q86Y29 109 aa11.07□□□□□ -0.64
TRAF4-216ENST00000586813 SPRR4Q96PI1 79 aa11.07□□□□□ -0.64
TRAF4-216ENST00000586813 SPAG11AQ6PDA7 123 aa11.06□□□□□ -0.64
TRAF4-216ENST00000586813 LINC00158P58513 81 aa11.05□□□□□ -0.64
TRAF4-216ENST00000586813 SLC7A5P1Q8MH63 180 aa11.03□□□□□ -0.64
TRAF4-216ENST00000586813 ZNF706Q9Y5V0 76 aaPredicted RBP11.03□□□□□ -0.64
TRAF4-216ENST00000586813 A0A0U1RRA0 63 aa11.02□□□□□ -0.65
TRAF4-216ENST00000586813 FP248Q71RG6 208 aaPredicted RBP11.02□□□□□ -0.65
TRAF4-216ENST00000586813 CHTOPQ9Y3Y2 248 aaKnown RBP11.02□□□□□ -0.65
TRAF4-216ENST00000586813 TMEM223A0PJW6 202 aa11□□□□□ -0.65
TRAF4-216ENST00000586813 PRYO14603 147 aa11□□□□□ -0.65
TRAF4-216ENST00000586813 C4orf48Q5BLP8 95 aa11□□□□□ -0.65
TRAF4-216ENST00000586813 Q8NBF4 154 aa10.99□□□□□ -0.65
TRAF4-216ENST00000586813 SPRR1AP35321 89 aa10.98□□□□□ -0.65
TRAF4-216ENST00000586813 BOD1L2Q8IYS8 172 aa10.98□□□□□ -0.65
TRAF4-216ENST00000586813 LINC00337Q8N6G1 96 aa10.98□□□□□ -0.65
TRAF4-216ENST00000586813 DAND5Q8N907 189 aa10.98□□□□□ -0.65
TRAF4-216ENST00000586813 NCR3O14931 201 aa10.97□□□□□ -0.65
TRAF4-216ENST00000586813 SMIM13P0DJ93 91 aa10.97□□□□□ -0.65
TRAF4-216ENST00000586813 ATP6V1G1O75348 118 aa10.96□□□□□ -0.65
TRAF4-216ENST00000586813 KRTAP13-3Q3SY46 172 aa10.96□□□□□ -0.65
TRAF4-216ENST00000586813 KCNQ1DNQ9H478 68 aa10.96□□□□□ -0.65
TRAF4-216ENST00000586813 TRAV12-1A0A0B4J245 112 aa10.95□□□□□ -0.66
TRAF4-216ENST00000586813 KRTAP4-16G5E9R7 235 aaPredicted RBP10.95□□□□□ -0.66
TRAF4-216ENST00000586813 MEIG1Q5JSS6 88 aa10.95□□□□□ -0.66
TRAF4-216ENST00000586813 MIR7-3HGQ8N6C7 128 aa10.95□□□□□ -0.66
TRAF4-216ENST00000586813 SMCR5Q8TEV8 140 aa10.95□□□□□ -0.66
TRAF4-216ENST00000586813 ETDCA0A1B0GVM5 59 aa10.93□□□□□ -0.66
TRAF4-216ENST00000586813 IFI27L1Q96BM0 104 aa10.93□□□□□ -0.66
TRAF4-216ENST00000586813 YPEL4Q96NS1 127 aa10.93□□□□□ -0.66
TRAF4-216ENST00000586813 KRTAP9-6A0A140TA67 174 aa10.92□□□□□ -0.66
TRAF4-216ENST00000586813 SPINK1P00995 79 aa10.92□□□□□ -0.66
TRAF4-216ENST00000586813 HERV-K104P63124 156 aa10.92□□□□□ -0.66
TRAF4-216ENST00000586813 LINC00483Q53H64 154 aa10.92□□□□□ -0.66
TRAF4-216ENST00000586813 TRBV10-3A0A0K0K1G6 114 aa10.91□□□□□ -0.66
TRAF4-216ENST00000586813 ASB16-AS1Q495Z4 193 aa10.91□□□□□ -0.66
TRAF4-216ENST00000586813 CHCHD1Q96BP2 118 aaKnown RBP10.9□□□□□ -0.66
TRAF4-216ENST00000586813 LINC00587B1AMM8 73 aa10.88□□□□□ -0.67
TRAF4-216ENST00000586813 NDUFA12Q9UI09 145 aa10.88□□□□□ -0.67
TRAF4-216ENST00000586813 S100A12P80511 92 aa10.87□□□□□ -0.67
TRAF4-216ENST00000586813 GAGE2AQ6NT46 116 aa10.87□□□□□ -0.67
TRAF4-216ENST00000586813 B5MCH6 92 aa10.86□□□□□ -0.67
TRAF4-216ENST00000586813 MOBPQ13875 183 aa10.86□□□□□ -0.67
TRAF4-216ENST00000586813 MAP1LC3CQ9BXW4 147 aa10.86□□□□□ -0.67
TRAF4-216ENST00000586813 MYMXA0A1B0GTQ4 84 aa10.85□□□□□ -0.67
TRAF4-216ENST00000586813 TRGC2P03986 189 aa10.85□□□□□ -0.67
TRAF4-216ENST00000586813 IGLV9-49A0A0B4J1Y8 123 aa10.84□□□□□ -0.67
TRAF4-216ENST00000586813 ERC2-IT1O76042 136 aa10.84□□□□□ -0.67
TRAF4-216ENST00000586813 RPS29P62273 56 aaKnown RBP10.84□□□□□ -0.67
TRAF4-216ENST00000586813 HSBP1O75506 76 aa10.83□□□□□ -0.68
TRAF4-216ENST00000586813 TSPEAR-AS2P59090 65 aa10.83□□□□□ -0.68
TRAF4-216ENST00000586813 SEC61BP60468 96 aaKnown RBP10.83□□□□□ -0.68
TRAF4-216ENST00000586813 Q8N377 158 aa10.83□□□□□ -0.68
TRAF4-216ENST00000586813 KRTAP4-1Q9BYQ7 146 aa10.83□□□□□ -0.68
TRAF4-216ENST00000586813 LOC107984156A0A0G2JMH3 177 aa10.82□□□□□ -0.68
TRAF4-216ENST00000586813 DDTP30046 118 aa10.82□□□□□ -0.68
TRAF4-216ENST00000586813 ARL17AQ8IVW1 177 aa10.82□□□□□ -0.68
TRAF4-216ENST00000586813 FAM19A2Q8N3H0 131 aa10.82□□□□□ -0.68
TRAF4-216ENST00000586813 Q9BRP9 147 aa10.82□□□□□ -0.68
TRAF4-216ENST00000586813 TRBV10-2A0A0K0K1G8 114 aa10.81□□□□□ -0.68
TRAF4-216ENST00000586813 H0Y8G0 127 aa10.81□□□□□ -0.68
TRAF4-216ENST00000586813 LINC01547P58512 204 aaPredicted RBP10.81□□□□□ -0.68
TRAF4-216ENST00000586813 Q6ZRX8 168 aa10.81□□□□□ -0.68
TRAF4-216ENST00000586813 SSBP3-AS1Q7Z2R9 100 aa10.81□□□□□ -0.68
TRAF4-216ENST00000586813 COLCA2A8K830 154 aa10.79□□□□□ -0.68
TRAF4-216ENST00000586813 LEPROTO15243 131 aa10.78□□□□□ -0.68
TRAF4-216ENST00000586813 SLC25A20O43772 301 aa10.78□□□□□ -0.68
TRAF4-216ENST00000586813 SPANXB1Q9NS25 103 aaPredicted RBP10.78□□□□□ -0.68
TRAF4-216ENST00000586813 MIEN1Q9BRT3 115 aa10.76□□□□□ -0.69
TRAF4-216ENST00000586813 J3QQQ9 107 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 SERF1AO75920 110 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 IGLV6-57P01721 117 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 PLNP26678 52 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 S100A7L2Q5SY68 101 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 XP32Q5T750 250 aa10.74□□□□□ -0.69
TRAF4-216ENST00000586813 LEPROTL1O95214 131 aa10.73□□□□□ -0.69
TRAF4-216ENST00000586813 NDUFC2O95298 119 aa10.73□□□□□ -0.69
TRAF4-216ENST00000586813 C9orf153Q5TBE3 101 aa10.73□□□□□ -0.69
TRAF4-216ENST00000586813 TRAV23DV6A0A075B6W5 121 aa10.72□□□□□ -0.69
TRAF4-216ENST00000586813 NMUP48645 174 aa10.72□□□□□ -0.69
TRAF4-216ENST00000586813 JOSD1Q15040 202 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms