RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 TMEM238C9JI98 176 aa16.72■□□□□ 0.27
LIG3-208ENST00000586407 SMIM13P0DJ93 91 aa16.72■□□□□ 0.27
LIG3-208ENST00000586407 FABP4P15090 132 aa16.72■□□□□ 0.27
LIG3-208ENST00000586407 UBE2AP49459 152 aa16.72■□□□□ 0.27
LIG3-208ENST00000586407 KRTAP13-1Q8IUC0 172 aa16.72■□□□□ 0.27
LIG3-208ENST00000586407 RPL24P83731 157 aaKnown RBP16.71■□□□□ 0.27
LIG3-208ENST00000586407 LRP2P98164 4655 aa16.7■□□□□ 0.26
LIG3-208ENST00000586407 PRLHP81277 87 aa16.7■□□□□ 0.26
LIG3-208ENST00000586407 PMCHL2Q9BQD1 86 aa16.69■□□□□ 0.26
LIG3-208ENST00000586407 ANAPC11Q9NYG5 84 aa16.69■□□□□ 0.26
LIG3-208ENST00000586407 A0A087X002 238 aa16.68■□□□□ 0.26
LIG3-208ENST00000586407 RPL13AP40429 203 aaKnown RBP16.68■□□□□ 0.26
LIG3-208ENST00000586407 TSPEAR-AS2P59090 65 aa16.68■□□□□ 0.26
LIG3-208ENST00000586407 MEIG1Q5JSS6 88 aa16.68■□□□□ 0.26
LIG3-208ENST00000586407 TMEM126AQ9H061 195 aa16.67■□□□□ 0.26
LIG3-208ENST00000586407 NDUFA12Q9UI09 145 aa16.67■□□□□ 0.26
LIG3-208ENST00000586407 FAM19A1Q7Z5A9 133 aa16.65■□□□□ 0.26
LIG3-208ENST00000586407 HSPB8Q9UJY1 196 aa16.65■□□□□ 0.26
LIG3-208ENST00000586407 M0R378 163 aa16.64■□□□□ 0.25
LIG3-208ENST00000586407 MIR7-3HGQ8N6C7 128 aa16.64■□□□□ 0.25
LIG3-208ENST00000586407 ATP6V1G1O75348 118 aa16.63■□□□□ 0.25
LIG3-208ENST00000586407 HERV-K104P63124 156 aa16.61■□□□□ 0.25
LIG3-208ENST00000586407 BOD1L2Q8IYS8 172 aa16.61■□□□□ 0.25
LIG3-208ENST00000586407 DPM2O94777 84 aa16.6■□□□□ 0.25
LIG3-208ENST00000586407 MYMXA0A1B0GTQ4 84 aa16.59■□□□□ 0.25
LIG3-208ENST00000586407 LEPROTO15243 131 aa16.59■□□□□ 0.25
LIG3-208ENST00000586407 PLNP26678 52 aa16.59■□□□□ 0.25
LIG3-208ENST00000586407 NCR3O14931 201 aa16.58■□□□□ 0.24
LIG3-208ENST00000586407 CRYGAP11844 174 aa16.57■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BKO60814 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BJP06899 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BOP23527 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BBP33778 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BDP58876 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BCP62807 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST2H2BEQ16778 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.56■□□□□ 0.24
LIG3-208ENST00000586407 DAND5Q8N907 189 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BHQ93079 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 PLEKHB2Q96CS7 222 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BNQ99877 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 HIST1H2BMQ99879 126 aa16.56■□□□□ 0.24
LIG3-208ENST00000586407 TSPAN13O95857 204 aa16.55■□□□□ 0.24
LIG3-208ENST00000586407 IGKCP01834 107 aa16.55■□□□□ 0.24
LIG3-208ENST00000586407 KRTAP13-2Q52LG2 175 aa16.55■□□□□ 0.24
LIG3-208ENST00000586407 TYMSOSQ8TAI1 123 aa16.55■□□□□ 0.24
LIG3-208ENST00000586407 J3QQQ9 107 aa16.54■□□□□ 0.24
LIG3-208ENST00000586407 MAP1LC3CQ9BXW4 147 aa16.53■□□□□ 0.24
LIG3-208ENST00000586407 HERVK_113P61574 105 aa16.52■□□□□ 0.24
LIG3-208ENST00000586407 HIGD2AQ9BW72 106 aa16.5■□□□□ 0.23
LIG3-208ENST00000586407 LINC00587B1AMM8 73 aa16.49■□□□□ 0.23
LIG3-208ENST00000586407 LGALS3P17931 250 aaKnown RBP16.49■□□□□ 0.23
LIG3-208ENST00000586407 LPAP08519 4548 aa16.48■□□□□ 0.23
LIG3-208ENST00000586407 PRR4Q16378 134 aa16.47■□□□□ 0.23
LIG3-208ENST00000586407 TRBV10-3A0A0K0K1G6 114 aa16.46■□□□□ 0.23
LIG3-208ENST00000586407 FAM229BQ4G0N7 80 aa16.46■□□□□ 0.23
LIG3-208ENST00000586407 PRYO14603 147 aa16.45■□□□□ 0.22
LIG3-208ENST00000586407 SYS1-DBNDD2H3BUS1 97 aa16.44■□□□□ 0.22
LIG3-208ENST00000586407 NMUP48645 174 aa16.43■□□□□ 0.22
LIG3-208ENST00000586407 IGKV2D-26A0A0A0MRZ7 120 aa16.42■□□□□ 0.22
LIG3-208ENST00000586407 KCNQ1DNQ9H478 68 aa16.41■□□□□ 0.22
LIG3-208ENST00000586407 SPRR1AP35321 89 aa16.4■□□□□ 0.22
LIG3-208ENST00000586407 NPC2P61916 151 aa16.4■□□□□ 0.22
LIG3-208ENST00000586407 LOC107984156A0A0G2JMH3 177 aa16.39■□□□□ 0.21
LIG3-208ENST00000586407 E9PLD3 99 aa16.39■□□□□ 0.21
LIG3-208ENST00000586407 ARL17AQ8IVW1 177 aa16.39■□□□□ 0.21
LIG3-208ENST00000586407 C3orf22Q8N5N4 141 aa16.39■□□□□ 0.21
LIG3-208ENST00000586407 EIF4EBP3O60516 100 aaPredicted RBP16.38■□□□□ 0.21
LIG3-208ENST00000586407 A0A0J9YXY3 114 aa16.37■□□□□ 0.21
LIG3-208ENST00000586407 KRTAP4-16G5E9R7 235 aaPredicted RBP16.37■□□□□ 0.21
LIG3-208ENST00000586407 ADAMTSL4-AS1Q5T5F5 129 aa16.37■□□□□ 0.21
LIG3-208ENST00000586407 SOSTDC1Q6X4U4 206 aa16.37■□□□□ 0.21
LIG3-208ENST00000586407 LINC00337Q8N6G1 96 aa16.37■□□□□ 0.21
LIG3-208ENST00000586407 SPRR4Q96PI1 79 aa16.37■□□□□ 0.21
LIG3-208ENST00000586407 ETDCA0A1B0GVM5 59 aa16.36■□□□□ 0.21
LIG3-208ENST00000586407 LINC01545Q5VT33 79 aa16.36■□□□□ 0.21
LIG3-208ENST00000586407 LINC00304Q8N9R0 145 aa16.36■□□□□ 0.21
LIG3-208ENST00000586407 MIEN1Q9BRT3 115 aa16.35■□□□□ 0.21
LIG3-208ENST00000586407 DDTP30046 118 aa16.34■□□□□ 0.21
LIG3-208ENST00000586407 SMCR5Q8TEV8 140 aa16.33■□□□□ 0.2
LIG3-208ENST00000586407 C3orf79P0CE67 100 aa16.32■□□□□ 0.2
LIG3-208ENST00000586407 PET117Q6UWS5 81 aa16.32■□□□□ 0.2
LIG3-208ENST00000586407 SPANXB1Q9NS25 103 aaPredicted RBP16.32■□□□□ 0.2
LIG3-208ENST00000586407 RNF213Q63HN8 5207 aa16.31■□□□□ 0.2
LIG3-208ENST00000586407 TRBV10-2A0A0K0K1G8 114 aa16.31■□□□□ 0.2
LIG3-208ENST00000586407 RETNLBQ9BQ08 111 aa16.31■□□□□ 0.2
LIG3-208ENST00000586407 PPDPFQ9H3Y8 114 aa16.3■□□□□ 0.2
LIG3-208ENST00000586407 TTTY13Q9BZ97 58 aa16.29■□□□□ 0.2
LIG3-208ENST00000586407 B5MCH6 92 aa16.28■□□□□ 0.2
LIG3-208ENST00000586407 KRTDAPP60985 99 aa16.28■□□□□ 0.2
LIG3-208ENST00000586407 COA6Q5JTJ3 125 aaKnown RBP16.28■□□□□ 0.2
LIG3-208ENST00000586407 ZNF706Q9Y5V0 76 aaPredicted RBP16.27■□□□□ 0.2
LIG3-208ENST00000586407 NDUFC2O95298 119 aa16.26■□□□□ 0.19
LIG3-208ENST00000586407 S100A12P80511 92 aa16.26■□□□□ 0.19
LIG3-208ENST00000586407 S100A7L2Q5SY68 101 aa16.26■□□□□ 0.19
LIG3-208ENST00000586407 LITAFQ99732 161 aa16.26■□□□□ 0.19
LIG3-208ENST00000586407 ERC2-IT1O76042 136 aa16.25■□□□□ 0.19
LIG3-208ENST00000586407 IGLV6-57P01721 117 aa16.25■□□□□ 0.19
LIG3-208ENST00000586407 ZNF815PA8K554 130 aa16.22■□□□□ 0.19
LIG3-208ENST00000586407 Q9BRP9 147 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms