RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 KRTAP4-11Q9BYQ6 195 aa6.4□□□□□ -1.38
SMCHD1-212ENST00000585229 ERG28Q9UKR5 140 aa6.4□□□□□ -1.38
SMCHD1-212ENST00000585229 RYR3Q15413 4870 aa6.4□□□□□ -1.39
SMCHD1-212ENST00000585229 TMEM238C9JI98 176 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 TLX1NBP0CAT3 122 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 SPANXDQ9BXN6 97 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 PPDPFQ9H3Y8 114 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 SPANXCQ9NY87 97 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 PKD1P98161 4303 aa6.39□□□□□ -1.39
SMCHD1-212ENST00000585229 SMIM13P0DJ93 91 aa6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 HNRNPA3P51991 378 aaKnown RBP6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 CIRBPQ14011 172 aaKnown RBP6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 C9orf116Q5BN46 136 aaPredicted RBP6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 MEIG1Q5JSS6 88 aa6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 LINC00336Q6ZUF6 198 aa6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 Q6ZVH6 145 aa6.38□□□□□ -1.39
SMCHD1-212ENST00000585229 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 DDTP30046 118 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 TAL2Q16559 108 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 ADAMTSL4-AS1Q5T5F5 129 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 C9orf163Q8N9P6 203 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 KRTAP4-2Q9BYR5 136 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 DNAH8Q96JB1 4490 aa6.37□□□□□ -1.39
SMCHD1-212ENST00000585229 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.36□□□□□ -1.39
SMCHD1-212ENST00000585229 LOC107984156A0A0G2JMH3 177 aa6.36□□□□□ -1.39
SMCHD1-212ENST00000585229 NDUFC2-KCTD14E9PQ53 114 aa6.36□□□□□ -1.39
SMCHD1-212ENST00000585229 IFITM1P13164 125 aa6.36□□□□□ -1.39
SMCHD1-212ENST00000585229 ARL17AQ8IVW1 177 aa6.36□□□□□ -1.39
SMCHD1-212ENST00000585229 PFN2P35080 140 aa6.35□□□□□ -1.39
SMCHD1-212ENST00000585229 LINC00158P58513 81 aa6.35□□□□□ -1.39
SMCHD1-212ENST00000585229 HSD52Q0P140 79 aa6.35□□□□□ -1.39
SMCHD1-212ENST00000585229 MIR7-3HGQ8N6C7 128 aa6.35□□□□□ -1.39
SMCHD1-212ENST00000585229 PKIGQ9Y2B9 76 aa6.35□□□□□ -1.39
SMCHD1-212ENST00000585229 LOC107984640A0A0U1RRK4 108 aa6.34□□□□□ -1.39
SMCHD1-212ENST00000585229 SOSTDC1Q6X4U4 206 aa6.34□□□□□ -1.39
SMCHD1-212ENST00000585229 Q6ZRP5 223 aa6.34□□□□□ -1.39
SMCHD1-212ENST00000585229 A0A0U1RRA0 63 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 CTAG1AP78358 180 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 CEND1Q8N111 149 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 DAND5Q8N907 189 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 LINC00308Q8TCZ7 52 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 COPS9Q8WXC6 57 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 SND1-IT1Q9HBX3 110 aa6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 DYNC1H1Q14204 4646 aaKnown RBP6.33□□□□□ -1.4
SMCHD1-212ENST00000585229 A0A1B0GVY2 172 aa6.32□□□□□ -1.4
SMCHD1-212ENST00000585229 SRSF9Q13242 221 aaKnown RBP eCLIP6.32□□□□□ -1.4
SMCHD1-212ENST00000585229 SDIM1Q6ZPB5 146 aa6.32□□□□□ -1.4
SMCHD1-212ENST00000585229 MUSTN1Q8IVN3 82 aa6.32□□□□□ -1.4
SMCHD1-212ENST00000585229 HIST1H4GQ99525 98 aa6.32□□□□□ -1.4
SMCHD1-212ENST00000585229 IGLV5-52A0A0A0MRZ9 124 aa6.31□□□□□ -1.4
SMCHD1-212ENST00000585229 C16orf90A8MZG2 172 aa6.31□□□□□ -1.4
SMCHD1-212ENST00000585229 RPL18AQ02543 176 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-212ENST00000585229 C9orf129Q5T035 196 aaKnown RBP6.31□□□□□ -1.4
SMCHD1-212ENST00000585229 A0A096LNI7 61 aa6.3□□□□□ -1.4
SMCHD1-212ENST00000585229 M0R143 59 aa6.3□□□□□ -1.4
SMCHD1-212ENST00000585229 NDUFC2O95298 119 aa6.3□□□□□ -1.4
SMCHD1-212ENST00000585229 BVES-AS1Q5T3Y7 98 aa6.3□□□□□ -1.4
SMCHD1-212ENST00000585229 FXYD2P54710 66 aa6.29□□□□□ -1.4
SMCHD1-212ENST00000585229 NPC2P61916 151 aa6.29□□□□□ -1.4
SMCHD1-212ENST00000585229 RPL24P83731 157 aaKnown RBP6.29□□□□□ -1.4
SMCHD1-212ENST00000585229 GAGE2EQ4V326 116 aa6.29□□□□□ -1.4
SMCHD1-212ENST00000585229 GAGE2DQ9UEU5 116 aa6.29□□□□□ -1.4
SMCHD1-212ENST00000585229 LRP1BQ9NZR2 4599 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 IGLV5-37A0A075B6J1 123 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 A0A1B0GWB2 263 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 A4D1N5 150 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 PCP4L1A6NKN8 68 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 EPM2AB3EWF7 344 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 TRIAP1O43715 76 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 VPREB1P12018 145 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 GAGE2BQ13066 116 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 Q8NDZ9 215 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 XAGE1AQ9HD64 81 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 LINC00474Q9P2X8 69 aa6.28□□□□□ -1.4
SMCHD1-212ENST00000585229 FUSP35637 526 aaKnown RBP eCLIP6.27□□□□□ -1.41
SMCHD1-212ENST00000585229 HINT1P49773 126 aaPredicted RBP6.27□□□□□ -1.41
SMCHD1-212ENST00000585229 LINC01620Q4KN68 170 aa6.27□□□□□ -1.41
SMCHD1-212ENST00000585229 SPACA4Q8TDM5 124 aa6.27□□□□□ -1.41
SMCHD1-212ENST00000585229 IGKV2-28A0A075B6P5 120 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 A0A0B4J2C4 111 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 TRBV10-2A0A0K0K1G8 114 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 IGKV2D-28P01615 120 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 Q6ZSA8 131 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 KRTAP7-1Q8IUC3 87 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 SNHG12Q9BXW3 62 aa6.26□□□□□ -1.41
SMCHD1-212ENST00000585229 PANO1I0J062 215 aa6.25□□□□□ -1.41
SMCHD1-212ENST00000585229 CHTF8P0CG12 524 aa6.25□□□□□ -1.41
SMCHD1-212ENST00000585229 CFC1BP0CG36 223 aa6.25□□□□□ -1.41
SMCHD1-212ENST00000585229 CFC1P0CG37 223 aa6.25□□□□□ -1.41
SMCHD1-212ENST00000585229 IGKV2-24A0A0C4DH68 120 aa6.24□□□□□ -1.41
SMCHD1-212ENST00000585229 KRTAP10-1P60331 282 aa6.24□□□□□ -1.41
SMCHD1-212ENST00000585229 SERTAD4-AS1Q5TG53 156 aa6.24□□□□□ -1.41
SMCHD1-212ENST00000585229 NHP2Q9NX24 153 aaKnown RBP6.24□□□□□ -1.41
SMCHD1-212ENST00000585229 PKHD1P08F94 4074 aa6.24□□□□□ -1.41
SMCHD1-212ENST00000585229 A0A1W2PNN7 141 aa6.23□□□□□ -1.41
SMCHD1-212ENST00000585229 FAM168BA1KXE4 195 aa6.23□□□□□ -1.41
SMCHD1-212ENST00000585229 A6NDN8 102 aa6.23□□□□□ -1.41
SMCHD1-212ENST00000585229 KRTAP4-5Q9BYR2 181 aa6.23□□□□□ -1.41
SMCHD1-212ENST00000585229 TRAV13-2A0A0B4J235 113 aa6.22□□□□□ -1.41
SMCHD1-212ENST00000585229 M0R378 163 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms