RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 C6orf223Q8N319 242 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 LINC00482Q8N8I6 264 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 C10orf25Q5T742 122 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 LOC110117498A0A087WWA1 95 aa8.29□□□□□ -1.08
SHMT1-208ENST00000582352 DPH3Q96FX2 82 aa8.29□□□□□ -1.08
SHMT1-208ENST00000582352 DSCR8Q96T75 97 aa8.28□□□□□ -1.08
SHMT1-208ENST00000582352 CYSRT1A8MQ03 144 aa8.28□□□□□ -1.08
SHMT1-208ENST00000582352 IGLV6-57P01721 117 aa8.27□□□□□ -1.08
SHMT1-208ENST00000582352 Q6ZQY7 126 aa8.27□□□□□ -1.09
SHMT1-208ENST00000582352 A0A0J9YWU9 116 aa8.27□□□□□ -1.09
SHMT1-208ENST00000582352 IGHV4-30-4P0DP06 118 aa8.27□□□□□ -1.09
SHMT1-208ENST00000582352 KRTAP10-3P60369 221 aa8.26□□□□□ -1.09
SHMT1-208ENST00000582352 HTN3P15516 51 aa8.26□□□□□ -1.09
SHMT1-208ENST00000582352 H3BQ85 93 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 APOC4P55056 127 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 PDE6GP18545 87 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 LINC01547P58512 204 aaPredicted RBP8.25□□□□□ -1.09
SHMT1-208ENST00000582352 HAMPP81172 84 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 LELP1Q5T871 98 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 C20orf197Q8N268 126 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 DIRC1Q969H9 104 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 KLK12Q9UKR0 248 aa8.25□□□□□ -1.09
SHMT1-208ENST00000582352 CELA1Q9UNI1 258 aa8.24□□□□□ -1.09
SHMT1-208ENST00000582352 NDUFC2-KCTD14E9PQ53 114 aa8.24□□□□□ -1.09
SHMT1-208ENST00000582352 Q6ZVQ6 151 aa8.24□□□□□ -1.09
SHMT1-208ENST00000582352 M0R2N4 97 aa8.23□□□□□ -1.09
SHMT1-208ENST00000582352 C9orf66Q5T8R8 295 aa8.23□□□□□ -1.09
SHMT1-208ENST00000582352 ANK3Q12955 4377 aaKnown RBP8.23□□□□□ -1.09
SHMT1-208ENST00000582352 C5orf47Q569G3 176 aa8.22□□□□□ -1.09
SHMT1-208ENST00000582352 XAGE1AQ9HD64 81 aa8.22□□□□□ -1.09
SHMT1-208ENST00000582352 PRR34Q9NV39 138 aa8.22□□□□□ -1.09
SHMT1-208ENST00000582352 GVQW2A0A096LPI5 108 aaPredicted RBP8.22□□□□□ -1.09
SHMT1-208ENST00000582352 PDZD2O15018 2839 aa8.22□□□□□ -1.09
SHMT1-208ENST00000582352 BCE1O60756 84 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 OXTP01178 125 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 MIFP14174 115 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 Q8NAQ8 132 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 SPATA3Q8NHX4 192 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 C6orf48Q9UBA6 75 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 TRAV7A0A075B6U4 112 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 ZNF73O43830 326 aaPredicted RBP8.21□□□□□ -1.1
SHMT1-208ENST00000582352 SPART-AS1P0CW21 52 aa8.21□□□□□ -1.1
SHMT1-208ENST00000582352 HIVEP2P31629 2446 aa8.2□□□□□ -1.1
SHMT1-208ENST00000582352 CXCL6P80162 114 aa8.2□□□□□ -1.1
SHMT1-208ENST00000582352 VWFP04275 2813 aa8.2□□□□□ -1.1
SHMT1-208ENST00000582352 COX7BP24311 80 aa8.2□□□□□ -1.1
SHMT1-208ENST00000582352 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.2□□□□□ -1.1
SHMT1-208ENST00000582352 TENM4Q6N022 2769 aa8.19□□□□□ -1.1
SHMT1-208ENST00000582352 FAM236DA0A1B0GTK5 79 aa8.18□□□□□ -1.1
SHMT1-208ENST00000582352 FAM236CP0DP71 79 aa8.18□□□□□ -1.1
SHMT1-208ENST00000582352 ELOF1P60002 83 aaKnown RBP8.18□□□□□ -1.1
SHMT1-208ENST00000582352 ITPR2Q14571 2701 aa8.18□□□□□ -1.1
SHMT1-208ENST00000582352 TRBV7-4A0A0J9YYF1 115 aa8.17□□□□□ -1.1
SHMT1-208ENST00000582352 SMR3AQ99954 134 aa8.16□□□□□ -1.1
SHMT1-208ENST00000582352 CAMK2N2Q96S95 79 aa8.16□□□□□ -1.1
SHMT1-208ENST00000582352 TRAV10A0A0B4J240 114 aa8.16□□□□□ -1.1
SHMT1-208ENST00000582352 HIGD2BQ4VC39 106 aa8.16□□□□□ -1.1
SHMT1-208ENST00000582352 TRBV7-6A0A0J9YX20 115 aa8.15□□□□□ -1.1
SHMT1-208ENST00000582352 H7BZZ5 65 aa8.15□□□□□ -1.11
SHMT1-208ENST00000582352 SCXQ7RTU7 201 aa8.15□□□□□ -1.11
SHMT1-208ENST00000582352 VPREB1P12018 145 aa8.14□□□□□ -1.11
SHMT1-208ENST00000582352 KLKP1Q107X0 134 aa8.14□□□□□ -1.11
SHMT1-208ENST00000582352 M0R378 163 aa8.13□□□□□ -1.11
SHMT1-208ENST00000582352 EGFEM1PQ0D2K5 195 aa8.12□□□□□ -1.11
SHMT1-208ENST00000582352 SNURFQ9Y675 71 aa8.12□□□□□ -1.11
SHMT1-208ENST00000582352 Q5XG85 94 aa8.12□□□□□ -1.11
SHMT1-208ENST00000582352 C4orf26Q17RF5 130 aa8.11□□□□□ -1.11
SHMT1-208ENST00000582352 WFDC10BQ8IUB3 73 aa8.11□□□□□ -1.11
SHMT1-208ENST00000582352 SERP1Q9Y6X1 66 aa8.11□□□□□ -1.11
SHMT1-208ENST00000582352 Q6ZRU5 148 aa8.1□□□□□ -1.11
SHMT1-208ENST00000582352 UNC79Q9P2D8 2635 aa8.1□□□□□ -1.11
SHMT1-208ENST00000582352 LINC00528Q8N1L1 170 aa8.1□□□□□ -1.11
SHMT1-208ENST00000582352 RMI2Q96E14 147 aa8.1□□□□□ -1.11
SHMT1-208ENST00000582352 HRCT1Q6UXD1 115 aa8.09□□□□□ -1.11
SHMT1-208ENST00000582352 TM2D3Q9BRN9 247 aa8.09□□□□□ -1.11
SHMT1-208ENST00000582352 F8WEM9 126 aa8.09□□□□□ -1.11
SHMT1-208ENST00000582352 NOTCH2Q04721 2471 aa8.08□□□□□ -1.12
SHMT1-208ENST00000582352 HIVEP1P15822 2718 aa8.08□□□□□ -1.12
SHMT1-208ENST00000582352 C15orf56Q8N910 161 aa8.08□□□□□ -1.12
SHMT1-208ENST00000582352 FASNP49327 2511 aaKnown RBP8.08□□□□□ -1.12
SHMT1-208ENST00000582352 KPRPQ5T749 579 aaPredicted RBP8.07□□□□□ -1.12
SHMT1-208ENST00000582352 NREPQ16612 68 aa8.07□□□□□ -1.12
SHMT1-208ENST00000582352 TENM1Q9UKZ4 2725 aa8.06□□□□□ -1.12
SHMT1-208ENST00000582352 BPY2O14599 106 aa8.06□□□□□ -1.12
SHMT1-208ENST00000582352 NDUFC1O43677 76 aa8.06□□□□□ -1.12
SHMT1-208ENST00000582352 KRTAP26-1Q6PEX3 210 aa8.06□□□□□ -1.12
SHMT1-208ENST00000582352 C1orf43Q9BWL3 253 aa8.05□□□□□ -1.12
SHMT1-208ENST00000582352 EPM2AB3EWF7 344 aa8.05□□□□□ -1.12
SHMT1-208ENST00000582352 H3BNG1 76 aa8.05□□□□□ -1.12
SHMT1-208ENST00000582352 Q6ZRP5 223 aa8.05□□□□□ -1.12
SHMT1-208ENST00000582352 Q8N9L7 120 aa8.04□□□□□ -1.12
SHMT1-208ENST00000582352 NKAPP1Q8N9T2 125 aa8.04□□□□□ -1.12
SHMT1-208ENST00000582352 INAFM1C9JVW0 142 aa8.03□□□□□ -1.12
SHMT1-208ENST00000582352 TMEM254Q8TBM7 123 aa8.03□□□□□ -1.12
SHMT1-208ENST00000582352 IGKV2D-24A0A075B6R9 120 aa8.02□□□□□ -1.13
SHMT1-208ENST00000582352 C3orf84H3BNL1 204 aa8.02□□□□□ -1.13
SHMT1-208ENST00000582352 WIPF1O43516 503 aa8.02□□□□□ -1.13
SHMT1-208ENST00000582352 IGKV4-1P06312 121 aa8.02□□□□□ -1.13
SHMT1-208ENST00000582352 ATP5EP56381 51 aaPredicted RBP8.02□□□□□ -1.13
SHMT1-208ENST00000582352 DEFB105AQ8NG35 78 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms