RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ZNF706Q9Y5V0 76 aaPredicted RBP7.07□□□□□ -1.28
SS18-219ENST00000581570 TINCRA0A1B0GVN0 87 aa7.06□□□□□ -1.28
SS18-219ENST00000581570 ATP5LO75964 103 aa7.06□□□□□ -1.28
SS18-219ENST00000581570 SPINK8P0C7L1 97 aa7.06□□□□□ -1.28
SS18-219ENST00000581570 IGLV5-45A0A087WSX0 123 aa7.05□□□□□ -1.28
SS18-219ENST00000581570 C9JQL5 133 aa7.05□□□□□ -1.28
SS18-219ENST00000581570 G0S2P27469 103 aa7.05□□□□□ -1.28
SS18-219ENST00000581570 SND1-IT1Q9HBX3 110 aa7.05□□□□□ -1.28
SS18-219ENST00000581570 KRTAP10-6P60371 365 aaPredicted RBP7.04□□□□□ -1.28
SS18-219ENST00000581570 RAB14P61106 215 aa7.04□□□□□ -1.28
SS18-219ENST00000581570 FAM19A2Q8N3H0 131 aa7.04□□□□□ -1.28
SS18-219ENST00000581570 TOMM6Q96B49 74 aa7.04□□□□□ -1.28
SS18-219ENST00000581570 NXT2Q9NPJ8 142 aaKnown RBP7.04□□□□□ -1.28
SS18-219ENST00000581570 ERASQ7Z444 233 aa7.03□□□□□ -1.28
SS18-219ENST00000581570 Q8N377 158 aa7.03□□□□□ -1.28
SS18-219ENST00000581570 SCGB3A1Q96QR1 104 aa7.03□□□□□ -1.28
SS18-219ENST00000581570 KRTAP9-7A8MTY7 169 aa7.02□□□□□ -1.29
SS18-219ENST00000581570 Q8NDZ9 215 aa7.02□□□□□ -1.29
SS18-219ENST00000581570 RPS29P62273 56 aaKnown RBP7.01□□□□□ -1.29
SS18-219ENST00000581570 ERG28Q9UKR5 140 aa7.01□□□□□ -1.29
SS18-219ENST00000581570 SLC25A20O43772 301 aa7□□□□□ -1.29
SS18-219ENST00000581570 ADCYAP1P18509 176 aa7□□□□□ -1.29
SS18-219ENST00000581570 SMCR5Q8TEV8 140 aa7□□□□□ -1.29
SS18-219ENST00000581570 CST9LQ9H4G1 147 aa7□□□□□ -1.29
SS18-219ENST00000581570 IGLV8-61A0A075B6I0 122 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 H3BRM9 83 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 LINC00310P59036 64 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 COX17Q14061 63 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 PEA15Q15121 130 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 PCOTHQ58A44 107 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 AKAP14Q86UN6 197 aa6.99□□□□□ -1.29
SS18-219ENST00000581570 KRTAP19-4Q3LI73 84 aa6.98□□□□□ -1.29
SS18-219ENST00000581570 SSBP3-AS1Q7Z2R9 100 aa6.98□□□□□ -1.29
SS18-219ENST00000581570 M0R2T5 61 aa6.97□□□□□ -1.29
SS18-219ENST00000581570 MOBPQ13875 183 aa6.97□□□□□ -1.29
SS18-219ENST00000581570 LINC00483Q53H64 154 aa6.97□□□□□ -1.29
SS18-219ENST00000581570 ZNF625Q96I27 306 aaPredicted RBP6.97□□□□□ -1.29
SS18-219ENST00000581570 IGLV9-49A0A0B4J1Y8 123 aa6.96□□□□□ -1.3
SS18-219ENST00000581570 PMVKQ15126 192 aa6.96□□□□□ -1.3
SS18-219ENST00000581570 GAGE2AQ6NT46 116 aa6.96□□□□□ -1.3
SS18-219ENST00000581570 IGLV5-39A0A0G2JS06 123 aa6.95□□□□□ -1.3
SS18-219ENST00000581570 PRYO14603 147 aa6.95□□□□□ -1.3
SS18-219ENST00000581570 LINC01549A6NIU2 74 aa6.94□□□□□ -1.3
SS18-219ENST00000581570 ETDCA0A1B0GVM5 59 aa6.93□□□□□ -1.3
SS18-219ENST00000581570 SPRR1AP35321 89 aa6.93□□□□□ -1.3
SS18-219ENST00000581570 LINC00158P58513 81 aa6.92□□□□□ -1.3
SS18-219ENST00000581570 KIAA1644Q3SXP7 199 aa6.92□□□□□ -1.3
SS18-219ENST00000581570 KRTAP4-16G5E9R7 235 aaPredicted RBP6.91□□□□□ -1.3
SS18-219ENST00000581570 IGLC3P0DOY3 106 aa6.91□□□□□ -1.3
SS18-219ENST00000581570 KCNQ1DNQ9H478 68 aa6.91□□□□□ -1.3
SS18-219ENST00000581570 ZNF22P17026 224 aaPredicted RBP6.9□□□□□ -1.3
SS18-219ENST00000581570 SFTA2Q6UW10 78 aa6.9□□□□□ -1.3
SS18-219ENST00000581570 A0A0U1RRA0 63 aa6.89□□□□□ -1.31
SS18-219ENST00000581570 ERC2-IT1O76042 136 aa6.89□□□□□ -1.31
SS18-219ENST00000581570 MT-ND4LP03901 98 aa6.89□□□□□ -1.31
SS18-219ENST00000581570 C9orf92A6NGG3 77 aa6.88□□□□□ -1.31
SS18-219ENST00000581570 LINC01546A6NGU7 62 aa6.88□□□□□ -1.31
SS18-219ENST00000581570 NCR3O14931 201 aa6.88□□□□□ -1.31
SS18-219ENST00000581570 NDUFA6P56556 154 aa6.88□□□□□ -1.31
SS18-219ENST00000581570 COX6B2Q6YFQ2 88 aa6.87□□□□□ -1.31
SS18-219ENST00000581570 BOD1L2Q8IYS8 172 aa6.87□□□□□ -1.31
SS18-219ENST00000581570 KRTAP9-9Q9BYP9 154 aa6.87□□□□□ -1.31
SS18-219ENST00000581570 KRTAP9-4Q9BYQ2 154 aa6.87□□□□□ -1.31
SS18-219ENST00000581570 B5MCH6 92 aa6.86□□□□□ -1.31
SS18-219ENST00000581570 C9orf153Q5TBE3 101 aa6.86□□□□□ -1.31
SS18-219ENST00000581570 FLGP20930 4061 aaPredicted RBP6.86□□□□□ -1.31
SS18-219ENST00000581570 TRAV9-1A0A075B6T8 112 aa6.85□□□□□ -1.31
SS18-219ENST00000581570 TRBV10-3A0A0K0K1G6 114 aa6.85□□□□□ -1.31
SS18-219ENST00000581570 ATP6V1G1O75348 118 aa6.85□□□□□ -1.31
SS18-219ENST00000581570 S100A12P80511 92 aa6.85□□□□□ -1.31
SS18-219ENST00000581570 TMEM170BQ5T4T1 132 aa6.84□□□□□ -1.31
SS18-219ENST00000581570 FA2HQ7L5A8 372 aa6.84□□□□□ -1.31
SS18-219ENST00000581570 SMCO4Q9NRQ5 59 aa6.84□□□□□ -1.31
SS18-219ENST00000581570 hCG_2014768A0A024R1R8 64 aa6.83□□□□□ -1.32
SS18-219ENST00000581570 SMIM13P0DJ93 91 aa6.83□□□□□ -1.32
SS18-219ENST00000581570 Q9BRP9 147 aa6.83□□□□□ -1.32
SS18-219ENST00000581570 C11orf86A6NJI1 115 aa6.82□□□□□ -1.32
SS18-219ENST00000581570 IGLV6-57P01721 117 aa6.81□□□□□ -1.32
SS18-219ENST00000581570 MIR7-3HGQ8N6C7 128 aa6.81□□□□□ -1.32
SS18-219ENST00000581570 LIMD2Q9BT23 127 aa6.81□□□□□ -1.32
SS18-219ENST00000581570 MEIG1Q5JSS6 88 aa6.8□□□□□ -1.32
SS18-219ENST00000581570 HRCT1Q6UXD1 115 aa6.79□□□□□ -1.32
SS18-219ENST00000581570 Q6ZRX8 168 aa6.79□□□□□ -1.32
SS18-219ENST00000581570 BAGE3Q86Y29 109 aa6.79□□□□□ -1.32
SS18-219ENST00000581570 DDTP30046 118 aa6.78□□□□□ -1.32
SS18-219ENST00000581570 A0A096LNJ9 63 aa6.77□□□□□ -1.33
SS18-219ENST00000581570 SSPOA2VEC9 5147 aa6.76□□□□□ -1.33
SS18-219ENST00000581570 JOSD1Q15040 202 aaPredicted RBP6.76□□□□□ -1.33
SS18-219ENST00000581570 ST20-AS1Q8NBB2 130 aa6.76□□□□□ -1.33
SS18-219ENST00000581570 TMEM223A0PJW6 202 aa6.75□□□□□ -1.33
SS18-219ENST00000581570 LINC00587B1AMM8 73 aa6.75□□□□□ -1.33
SS18-219ENST00000581570 RPL37P61927 97 aaKnown RBP6.75□□□□□ -1.33
SS18-219ENST00000581570 HERV-K104P63124 156 aa6.75□□□□□ -1.33
SS18-219ENST00000581570 USH2AO75445 5202 aa6.75□□□□□ -1.33
SS18-219ENST00000581570 HBDP02042 147 aa6.74□□□□□ -1.33
SS18-219ENST00000581570 FABP9Q0Z7S8 132 aa6.74□□□□□ -1.33
SS18-219ENST00000581570 CHTOPQ9Y3Y2 248 aaKnown RBP6.74□□□□□ -1.33
SS18-219ENST00000581570 TRBV10-2A0A0K0K1G8 114 aa6.73□□□□□ -1.33
SS18-219ENST00000581570 MAP1LC3CQ9BXW4 147 aa6.73□□□□□ -1.33
SS18-219ENST00000581570 LINC00614P0C842 121 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms