RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TRGV9Q99603 122 aa-0.71□□□□□ -2.52
SMCHD1-204ENST00000581226 CUX1P39880 1505 aa-0.72□□□□□ -2.52
SMCHD1-204ENST00000581226 TRAV30A0A087WSZ9 112 aa-0.72□□□□□ -2.52
SMCHD1-204ENST00000581226 NDUFC1O43677 76 aa-0.72□□□□□ -2.52
SMCHD1-204ENST00000581226 MPC2O95563 127 aa-0.72□□□□□ -2.52
SMCHD1-204ENST00000581226 PSMG4Q5JS54 123 aa-0.72□□□□□ -2.52
SMCHD1-204ENST00000581226 PRRC2CQ9Y520 2896 aaKnown RBP-0.72□□□□□ -2.53
SMCHD1-204ENST00000581226 COL14A1Q05707 1796 aaKnown RBP-0.73□□□□□ -2.53
SMCHD1-204ENST00000581226 PKD1P98161 4303 aa-0.73□□□□□ -2.53
SMCHD1-204ENST00000581226 H3BQF6 201 aa-0.73□□□□□ -2.53
SMCHD1-204ENST00000581226 S100A10P60903 97 aa-0.73□□□□□ -2.53
SMCHD1-204ENST00000581226 H1FX-AS1Q4G0G2 97 aa-0.73□□□□□ -2.53
SMCHD1-204ENST00000581226 CRYBG1Q9Y4K1 1723 aa-0.74□□□□□ -2.53
SMCHD1-204ENST00000581226 PMCHL1Q16048 86 aa-0.74□□□□□ -2.53
SMCHD1-204ENST00000581226 PMCHL2Q9BQD1 86 aa-0.74□□□□□ -2.53
SMCHD1-204ENST00000581226 KIF20BQ96Q89 1820 aa-0.74□□□□□ -2.53
SMCHD1-204ENST00000581226 NBASA2RRP1 2371 aa-0.75□□□□□ -2.53
SMCHD1-204ENST00000581226 ANKRD26Q9UPS8 1709 aa-0.75□□□□□ -2.53
SMCHD1-204ENST00000581226 SERP2Q8N6R1 65 aa-0.75□□□□□ -2.53
SMCHD1-204ENST00000581226 LELP1Q5T871 98 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 VAMP8Q9BV40 100 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 CNTLNQ9NXG0 1405 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 TEX14Q8IWB6 1497 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 RAPGEF2Q9Y4G8 1499 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 SAMD9Q5K651 1589 aa-0.76□□□□□ -2.53
SMCHD1-204ENST00000581226 FYCO1Q9BQS8 1478 aa-0.77□□□□□ -2.53
SMCHD1-204ENST00000581226 ARMS2P0C7Q2 107 aa-0.77□□□□□ -2.53
SMCHD1-204ENST00000581226 RBP2P50120 134 aa-0.77□□□□□ -2.53
SMCHD1-204ENST00000581226 KRTAP6-2Q3LI66 62 aa-0.77□□□□□ -2.53
SMCHD1-204ENST00000581226 TCEAL7Q9BRU2 100 aa-0.77□□□□□ -2.53
SMCHD1-204ENST00000581226 RGPD2P0DJD1 1756 aa-0.78□□□□□ -2.53
SMCHD1-204ENST00000581226 CLTCQ00610 1675 aaKnown RBP-0.78□□□□□ -2.53
SMCHD1-204ENST00000581226 ATOX1O00244 68 aa-0.78□□□□□ -2.53
SMCHD1-204ENST00000581226 UQCRHP07919 91 aa-0.78□□□□□ -2.53
SMCHD1-204ENST00000581226 UBR1Q8IWV7 1749 aa-0.78□□□□□ -2.53
SMCHD1-204ENST00000581226 CCDC141Q6ZP82 1450 aa-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 GNGT1P63211 74 aa-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 NCMAPQ5T1S8 102 aa-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 PSENENQ9NZ42 101 aa-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 AKAP12Q02952 1782 aa-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 TNRC18O15417 2968 aaPredicted RBP-0.79□□□□□ -2.54
SMCHD1-204ENST00000581226 QSER1Q2KHR3 1735 aa-0.8□□□□□ -2.54
SMCHD1-204ENST00000581226 MXRA5Q9NR99 2828 aa-0.8□□□□□ -2.54
SMCHD1-204ENST00000581226 BCORQ6W2J9 1755 aa-0.8□□□□□ -2.54
SMCHD1-204ENST00000581226 LAMA5O15230 3695 aa-0.8□□□□□ -2.54
SMCHD1-204ENST00000581226 KMT2CQ8NEZ4 4911 aaKnown RBP-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 I3L3M4 83 aa-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 MRPL34Q9BQ48 92 aaKnown RBP-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 ABCC2Q92887 1545 aa-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 PKD1L3Q7Z443 1732 aa-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 LYSTQ99698 3801 aa-0.81□□□□□ -2.54
SMCHD1-204ENST00000581226 TRBV7-7A0A0K0K1E9 115 aa-0.82□□□□□ -2.54
SMCHD1-204ENST00000581226 ACBD7Q8N6N7 88 aa-0.82□□□□□ -2.54
SMCHD1-204ENST00000581226 NBPF19A0A087WUL8 3843 aa-0.83□□□□□ -2.54
SMCHD1-204ENST00000581226 DPY30Q9C005 99 aa-0.83□□□□□ -2.54
SMCHD1-204ENST00000581226 AP4S1Q9Y587 144 aa-0.83□□□□□ -2.54
SMCHD1-204ENST00000581226 ABCC10Q5T3U5 1492 aa-0.84□□□□□ -2.54
SMCHD1-204ENST00000581226 F8WEM9 126 aa-0.84□□□□□ -2.54
SMCHD1-204ENST00000581226 ZZEF1O43149 2961 aa-0.84□□□□□ -2.54
SMCHD1-204ENST00000581226 SPRR2AP35326 72 aa-0.84□□□□□ -2.54
SMCHD1-204ENST00000581226 RGPD1P0DJD0 1748 aa-0.84□□□□□ -2.54
SMCHD1-204ENST00000581226 SPTBN4Q9H254 2564 aa-0.85□□□□□ -2.54
SMCHD1-204ENST00000581226 IGLC2P0DOY2 106 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 IGLC3P0DOY3 106 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 DEFB135Q30KP9 77 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 DEFB112Q30KQ8 113 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 HECTD1Q9ULT8 2610 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 PCLOQ9Y6V0 5065 aa-0.85□□□□□ -2.55
SMCHD1-204ENST00000581226 ALKQ9UM73 1620 aa-0.86□□□□□ -2.55
SMCHD1-204ENST00000581226 COL5A1-AS1Q5SY13 56 aa-0.86□□□□□ -2.55
SMCHD1-204ENST00000581226 HIGD1BQ9P298 99 aa-0.86□□□□□ -2.55
SMCHD1-204ENST00000581226 HERC1Q15751 4861 aa-0.87□□□□□ -2.55
SMCHD1-204ENST00000581226 LINC00032P0C843 101 aa-0.87□□□□□ -2.55
SMCHD1-204ENST00000581226 FAUP35544 74 aaKnown RBP-0.87□□□□□ -2.55
SMCHD1-204ENST00000581226 ETDBQ3ZM63 59 aa-0.87□□□□□ -2.55
SMCHD1-204ENST00000581226 UBR3Q6ZT12 1888 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 PDE4DIPQ5VU43 2346 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 EPRSP07814 1512 aaKnown RBP-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 FAT3Q8TDW7 4589 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 DNAH6Q9C0G6 4158 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 HMGN3Q15651 99 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 C9orf62Q8N4C0 152 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 EPG5Q9HCE0 2579 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 FANCAO15360 1455 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 ADAMTS12P58397 1594 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 DNAH9Q9NYC9 4486 aa-0.88□□□□□ -2.55
SMCHD1-204ENST00000581226 VPS8Q8N3P4 1428 aa-0.89□□□□□ -2.55
SMCHD1-204ENST00000581226 PTPN23Q9H3S7 1636 aa-0.89□□□□□ -2.55
SMCHD1-204ENST00000581226 HTTP42858 3142 aa-0.89□□□□□ -2.55
SMCHD1-204ENST00000581226 SPTY2D1-AS1A0A0U1RR47 76 aa-0.89□□□□□ -2.55
SMCHD1-204ENST00000581226 RGPD4Q7Z3J3 1758 aa-0.89□□□□□ -2.55
SMCHD1-204ENST00000581226 TACC2O95359 2948 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 MAGI2Q86UL8 1455 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 SONP18583 2426 aaKnown RBP-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 UQCRHLA0A096LP55 91 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 D6R8Y8 96 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 M0R143 59 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 LEPROTL1O95214 131 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 MUSTN1Q8IVN3 82 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 SNHG12Q9BXW3 62 aa-0.9□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms