RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RPL18AQ02543 176 aaKnown RBP9.83□□□□□ -0.84
SS18-215ENST00000580642 SDIM1Q6ZPB5 146 aa9.83□□□□□ -0.84
SS18-215ENST00000580642 RYR2Q92736 4967 aa9.83□□□□□ -0.84
SS18-215ENST00000580642 TRBV10-2A0A0K0K1G8 114 aa9.82□□□□□ -0.84
SS18-215ENST00000580642 LBHQ53QV2 105 aaPredicted RBP9.82□□□□□ -0.84
SS18-215ENST00000580642 SNHG12Q9BXW3 62 aa9.82□□□□□ -0.84
SS18-215ENST00000580642 EIF4EBP3O60516 100 aaPredicted RBP9.81□□□□□ -0.84
SS18-215ENST00000580642 GAGE2EQ4V326 116 aa9.81□□□□□ -0.84
SS18-215ENST00000580642 GAGE2DQ9UEU5 116 aa9.81□□□□□ -0.84
SS18-215ENST00000580642 TRAV13-2A0A0B4J235 113 aa9.8□□□□□ -0.84
SS18-215ENST00000580642 NPC2P61916 151 aa9.8□□□□□ -0.84
SS18-215ENST00000580642 GAGE2BQ13066 116 aa9.8□□□□□ -0.84
SS18-215ENST00000580642 XAGE1AQ9HD64 81 aa9.8□□□□□ -0.84
SS18-215ENST00000580642 KMT2CQ8NEZ4 4911 aaKnown RBP9.8□□□□□ -0.84
SS18-215ENST00000580642 IGLV5-37A0A075B6J1 123 aa9.79□□□□□ -0.84
SS18-215ENST00000580642 CFC1BP0CG36 223 aa9.79□□□□□ -0.84
SS18-215ENST00000580642 CFC1P0CG37 223 aa9.79□□□□□ -0.84
SS18-215ENST00000580642 COL5A1-AS1Q5SY13 56 aa9.79□□□□□ -0.84
SS18-215ENST00000580642 C9orf129Q5T035 196 aaKnown RBP9.79□□□□□ -0.84
SS18-215ENST00000580642 NHP2Q9NX24 153 aaKnown RBP9.79□□□□□ -0.84
SS18-215ENST00000580642 RAB37Q96AX2 223 aa9.78□□□□□ -0.84
SS18-215ENST00000580642 A0A096LNI7 61 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 VPREB1P12018 145 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 BATFQ16520 125 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 PRO1854Q9UHT4 67 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 CBY1Q9Y3M2 126 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 FAT2Q9NYQ8 4349 aa9.77□□□□□ -0.85
SS18-215ENST00000580642 FRAS1Q86XX4 4008 aa9.76□□□□□ -0.85
SS18-215ENST00000580642 IGKV2-28A0A075B6P5 120 aa9.75□□□□□ -0.85
SS18-215ENST00000580642 M0R378 163 aa9.75□□□□□ -0.85
SS18-215ENST00000580642 IGKV2D-28P01615 120 aa9.75□□□□□ -0.85
SS18-215ENST00000580642 TMEM126AQ9H061 195 aa9.75□□□□□ -0.85
SS18-215ENST00000580642 KRTAP10-2P60368 255 aa9.74□□□□□ -0.85
SS18-215ENST00000580642 SPACA4Q8TDM5 124 aa9.74□□□□□ -0.85
SS18-215ENST00000580642 EPM2AB3EWF7 344 aa9.73□□□□□ -0.85
SS18-215ENST00000580642 NKAPP1Q8N9T2 125 aa9.73□□□□□ -0.85
SS18-215ENST00000580642 IGKV2-24A0A0C4DH68 120 aa9.72□□□□□ -0.85
SS18-215ENST00000580642 A0A1B0GVY2 172 aa9.72□□□□□ -0.85
SS18-215ENST00000580642 DNAH11Q96DT5 4516 aa9.72□□□□□ -0.85
SS18-215ENST00000580642 IGLV6-57P01721 117 aa9.71□□□□□ -0.86
SS18-215ENST00000580642 LINC00337Q8N6G1 96 aa9.71□□□□□ -0.86
SS18-215ENST00000580642 Q8NDZ9 215 aa9.71□□□□□ -0.86
SS18-215ENST00000580642 LINC01620Q4KN68 170 aa9.7□□□□□ -0.86
SS18-215ENST00000580642 S100A7L2Q5SY68 101 aa9.7□□□□□ -0.86
SS18-215ENST00000580642 SERTAD4-AS1Q5TG53 156 aa9.7□□□□□ -0.86
SS18-215ENST00000580642 K7ERJ3 54 aa9.69□□□□□ -0.86
SS18-215ENST00000580642 RPL13AP40429 203 aaKnown RBP9.69□□□□□ -0.86
SS18-215ENST00000580642 PRR3P79522 188 aaKnown RBP9.69□□□□□ -0.86
SS18-215ENST00000580642 C22orf24Q9Y442 160 aa9.69□□□□□ -0.86
SS18-215ENST00000580642 A0A1W2PNN7 141 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 TAX1BP3O14907 124 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 NCR3O14931 201 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 Q6ZSA8 131 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 MRPL55Q7Z7F7 128 aaKnown RBP9.68□□□□□ -0.86
SS18-215ENST00000580642 OR13C6PQ8NH95 151 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 PLAC8Q9NZF1 115 aa9.68□□□□□ -0.86
SS18-215ENST00000580642 C9orf118A6NHY6 69 aa9.67□□□□□ -0.86
SS18-215ENST00000580642 CHTF8P0CG12 524 aa9.67□□□□□ -0.86
SS18-215ENST00000580642 KRTAP7-1Q8IUC3 87 aa9.67□□□□□ -0.86
SS18-215ENST00000580642 DPH3Q96FX2 82 aa9.67□□□□□ -0.86
SS18-215ENST00000580642 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.67□□□□□ -0.86
SS18-215ENST00000580642 FAM168BA1KXE4 195 aa9.66□□□□□ -0.86
SS18-215ENST00000580642 M0QXV9 152 aa9.66□□□□□ -0.86
SS18-215ENST00000580642 RPL28P46779 137 aaKnown RBP9.66□□□□□ -0.86
SS18-215ENST00000580642 FAM19A5Q7Z5A7 132 aaPredicted RBP9.66□□□□□ -0.86
SS18-215ENST00000580642 C7orf33Q8WU49 177 aa9.66□□□□□ -0.86
SS18-215ENST00000580642 TSPAN13O95857 204 aa9.65□□□□□ -0.86
SS18-215ENST00000580642 COX6CP09669 75 aa9.65□□□□□ -0.86
SS18-215ENST00000580642 Q1RN00 199 aa9.65□□□□□ -0.86
SS18-215ENST00000580642 LYRM7Q5U5X0 104 aa9.65□□□□□ -0.86
SS18-215ENST00000580642 KCNQ1DNQ9H478 68 aa9.65□□□□□ -0.86
SS18-215ENST00000580642 PKD1P98161 4303 aa9.65□□□□□ -0.87
SS18-215ENST00000580642 HECTD4Q9Y4D8 3996 aa9.64□□□□□ -0.87
SS18-215ENST00000580642 IGLV1-50A0A075B6I6 118 aa9.64□□□□□ -0.87
SS18-215ENST00000580642 A0A087WYN8 130 aa9.64□□□□□ -0.87
SS18-215ENST00000580642 TRBV10-3A0A0K0K1G6 114 aa9.64□□□□□ -0.87
SS18-215ENST00000580642 PANO1I0J062 215 aa9.64□□□□□ -0.87
SS18-215ENST00000580642 FUSP35637 526 aaKnown RBP eCLIP9.64□□□□□ -0.87
SS18-215ENST00000580642 DNAH5Q8TE73 4624 aa9.63□□□□□ -0.87
SS18-215ENST00000580642 KRTAP10-1P60331 282 aa9.63□□□□□ -0.87
SS18-215ENST00000580642 SMIM11BQ8TCY0 68 aa9.63□□□□□ -0.87
SS18-215ENST00000580642 LINC00167Q96N53 147 aa9.63□□□□□ -0.87
SS18-215ENST00000580642 TRAV23DV6A0A075B6W5 121 aa9.62□□□□□ -0.87
SS18-215ENST00000580642 TRBV7-6A0A0J9YX20 115 aa9.62□□□□□ -0.87
SS18-215ENST00000580642 PRYO14603 147 aa9.62□□□□□ -0.87
SS18-215ENST00000580642 VAMP3Q15836 100 aa9.62□□□□□ -0.87
SS18-215ENST00000580642 RYR3Q15413 4870 aa9.61□□□□□ -0.87
SS18-215ENST00000580642 H0YGX0 51 aa9.61□□□□□ -0.87
SS18-215ENST00000580642 H7C2G1 150 aa9.61□□□□□ -0.87
SS18-215ENST00000580642 PSMB2P49721 201 aa9.61□□□□□ -0.87
SS18-215ENST00000580642 H3BUT2 72 aa9.6□□□□□ -0.87
SS18-215ENST00000580642 A0A1W2PPM0 123 aa9.59□□□□□ -0.87
SS18-215ENST00000580642 ZNF73O43830 326 aaPredicted RBP9.59□□□□□ -0.87
SS18-215ENST00000580642 FABP2P12104 132 aa9.59□□□□□ -0.87
SS18-215ENST00000580642 SPRR1AP35321 89 aa9.59□□□□□ -0.87
SS18-215ENST00000580642 LCE2DQ5TA82 110 aaPredicted RBP9.59□□□□□ -0.87
SS18-215ENST00000580642 DIRC1Q969H9 104 aa9.59□□□□□ -0.87
SS18-215ENST00000580642 DNAH8Q96JB1 4490 aa9.58□□□□□ -0.88
SS18-215ENST00000580642 TRBV20-1A0A075B6N2 111 aa9.58□□□□□ -0.88
SS18-215ENST00000580642 GAGE10A6NGK3 116 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms