RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 C10orf113Q5VZT2 155 aa-1.74□□□□□ -2.69
SS18-214ENST00000580003 C8orf59Q8N0T1 100 aaPredicted RBP-1.74□□□□□ -2.69
SS18-214ENST00000580003 WFDC9Q8NEX5 89 aa-1.74□□□□□ -2.69
SS18-214ENST00000580003 NXT2Q9NPJ8 142 aaKnown RBP-1.74□□□□□ -2.69
SS18-214ENST00000580003 ARHGEF5Q12774 1597 aa-1.74□□□□□ -2.69
SS18-214ENST00000580003 CDC42BPAQ5VT25 1732 aa-1.74□□□□□ -2.69
SS18-214ENST00000580003 BCORQ6W2J9 1755 aa-1.75□□□□□ -2.69
SS18-214ENST00000580003 UBA52P62987 128 aaKnown RBP-1.75□□□□□ -2.69
SS18-214ENST00000580003 MYOZ3Q8TDC0 251 aa-1.75□□□□□ -2.69
SS18-214ENST00000580003 TSLPQ969D9 159 aa-1.75□□□□□ -2.69
SS18-214ENST00000580003 CPSF1Q10570 1443 aaKnown RBP-1.75□□□□□ -2.69
SS18-214ENST00000580003 MAGI1Q96QZ7 1491 aaPredicted RBP-1.75□□□□□ -2.69
SS18-214ENST00000580003 A0A087WVE0 104 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 LINC00959A0A1B0GUT2 108 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 SELENOWP63302 87 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 Q56UQ5 140 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 SPRR4Q96PI1 79 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 UQCR10Q9UDW1 63 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 SZT2Q5T011 3432 aa-1.76□□□□□ -2.69
SS18-214ENST00000580003 KIAA0556O60303 1618 aa-1.77□□□□□ -2.69
SS18-214ENST00000580003 FYCO1Q9BQS8 1478 aa-1.77□□□□□ -2.69
SS18-214ENST00000580003 CICQ96RK0 1608 aaPredicted RBP-1.77□□□□□ -2.69
SS18-214ENST00000580003 MYOM1P52179 1685 aa-1.77□□□□□ -2.69
SS18-214ENST00000580003 FAM25AB3EWG3 89 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 FAM25CB3EWG5 89 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 FAM25GB3EWG6 89 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 IGLC1P0CG04 106 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 BTG2P78543 158 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 COMMD6Q7Z4G1 85 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 FDCSPQ8NFU4 85 aa-1.78□□□□□ -2.69
SS18-214ENST00000580003 NAIPQ13075 1403 aa-1.79□□□□□ -2.7
SS18-214ENST00000580003 MEIG1Q5JSS6 88 aa-1.79□□□□□ -2.7
SS18-214ENST00000580003 ARL11Q969Q4 196 aa-1.79□□□□□ -2.7
SS18-214ENST00000580003 PRO1933Q9H354 126 aa-1.79□□□□□ -2.7
SS18-214ENST00000580003 APLNQ9ULZ1 77 aa-1.79□□□□□ -2.7
SS18-214ENST00000580003 MKI67P46013 3256 aaKnown RBP-1.79□□□□□ -2.7
SS18-214ENST00000580003 PCNTO95613 3336 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 CHKB-CPT1BH3BT56 60 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 APOC2P02655 101 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 CLPSL2Q6UWE3 100 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 C5orf38Q86SI9 138 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 FAM167A-AS1Q96KT0 104 aa-1.8□□□□□ -2.7
SS18-214ENST00000580003 DNAH14Q0VDD8 3507 aa-1.81□□□□□ -2.7
SS18-214ENST00000580003 MIF4GDA9UHW6 222 aaKnown RBP-1.81□□□□□ -2.7
SS18-214ENST00000580003 LELP1Q5T871 98 aa-1.82□□□□□ -2.7
SS18-214ENST00000580003 LINC01600Q96MT4 127 aa-1.82□□□□□ -2.7
SS18-214ENST00000580003 MAGI2Q86UL8 1455 aa-1.82□□□□□ -2.7
SS18-214ENST00000580003 RPS29P62273 56 aaKnown RBP-1.83□□□□□ -2.7
SS18-214ENST00000580003 CDC42SE2Q9NRR3 84 aa-1.83□□□□□ -2.7
SS18-214ENST00000580003 CFAP47Q6ZTR5 3102 aa-1.83□□□□□ -2.7
SS18-214ENST00000580003 CCDC141Q6ZP82 1450 aa-1.83□□□□□ -2.7
SS18-214ENST00000580003 LOC400499M0QZD8 3231 aa-1.83□□□□□ -2.7
SS18-214ENST00000580003 HMGXB3Q12766 1538 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 VCANP13611 3396 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 CPSF4LA6NMK7 179 aaKnown RBP-1.84□□□□□ -2.7
SS18-214ENST00000580003 CATR1Q13166 79 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 LINC00470Q9BZP3 86 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 LINC00846Q9NV44 126 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 ARL2-SNX15V9GYD0 113 aa-1.84□□□□□ -2.7
SS18-214ENST00000580003 PSME4Q14997 1843 aa-1.85□□□□□ -2.71
SS18-214ENST00000580003 UBE2D3P61077 147 aa-1.86□□□□□ -2.71
SS18-214ENST00000580003 UBE2D2P62837 147 aa-1.86□□□□□ -2.71
SS18-214ENST00000580003 FAM223AQ8IWN6 122 aa-1.86□□□□□ -2.71
SS18-214ENST00000580003 MARF1Q9Y4F3 1742 aaKnown RBP-1.86□□□□□ -2.71
SS18-214ENST00000580003 BTAF1O14981 1849 aa-1.87□□□□□ -2.71
SS18-214ENST00000580003 FGF7P21781 194 aa-1.87□□□□□ -2.71
SS18-214ENST00000580003 ZNF436-AS1Q8NC38 126 aaPredicted RBP-1.88□□□□□ -2.71
SS18-214ENST00000580003 A0A0G2JMZ2 1700 aa-1.88□□□□□ -2.71
SS18-214ENST00000580003 PRLHP81277 87 aa-1.89□□□□□ -2.71
SS18-214ENST00000580003 CRIPTQ9P021 101 aa-1.89□□□□□ -2.71
SS18-214ENST00000580003 WFDC13Q8IUB5 93 aa-1.9□□□□□ -2.71
SS18-214ENST00000580003 A0A1B0GWA3 101 aa-1.91□□□□□ -2.72
SS18-214ENST00000580003 LINC00474Q9P2X8 69 aa-1.91□□□□□ -2.72
SS18-214ENST00000580003 C1orf167Q5SNV9 1468 aa-1.91□□□□□ -2.72
SS18-214ENST00000580003 TET3O43151 1660 aa-1.91□□□□□ -2.72
SS18-214ENST00000580003 NKTRP30414 1462 aaKnown RBP-1.92□□□□□ -2.72
SS18-214ENST00000580003 KTN1Q86UP2 1357 aaKnown RBP-1.92□□□□□ -2.72
SS18-214ENST00000580003 UBE2L5PA0A1B0GUS4 154 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 GNG7O60262 68 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 UBE2L3P68036 154 aaKnown RBP-1.92□□□□□ -2.72
SS18-214ENST00000580003 C9orf153Q5TBE3 101 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 PRO3102Q9H379 93 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 ALKQ9UM73 1620 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 PRDM15P57071 1507 aaPredicted RBP-1.92□□□□□ -2.72
SS18-214ENST00000580003 ASXL1Q8IXJ9 1541 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 EHBP1L1Q8N3D4 1523 aa-1.92□□□□□ -2.72
SS18-214ENST00000580003 TIAM2Q8IVF5 1701 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 LOC105371267A0A1B0GV96 52 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 F6UZH7 168 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 COX6CP09669 75 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 SEC11AP67812 179 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 MRPL34Q9BQ48 92 aaKnown RBP-1.93□□□□□ -2.72
SS18-214ENST00000580003 USP34Q70CQ2 3546 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 SCN11AQ9UI33 1791 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 MYH7P12883 1935 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 UNC80Q8N2C7 3258 aa-1.93□□□□□ -2.72
SS18-214ENST00000580003 TNP1P09430 55 aa-1.94□□□□□ -2.72
SS18-214ENST00000580003 ATP5EP56381 51 aaPredicted RBP-1.94□□□□□ -2.72
SS18-214ENST00000580003 TCHHQ07283 1943 aa-1.95□□□□□ -2.72
SS18-214ENST00000580003 H7BZZ5 65 aa-1.95□□□□□ -2.72
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms