RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 CPSF4LA6NMK7 179 aaKnown RBP3.67□□□□□ -1.82
COPS3-216ENST00000579716 SPACA4Q8TDM5 124 aa3.67□□□□□ -1.82
COPS3-216ENST00000579716 CNFNQ9BYD5 112 aa3.67□□□□□ -1.82
COPS3-216ENST00000579716 DOCK10Q96BY6 2186 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 IGLV6-57P01721 117 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 FXYD4P59646 89 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 ARHGAP5-AS1Q96IT6 56 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 ABCA4P78363 2273 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 CEP192Q8TEP8 1941 aa3.66□□□□□ -1.82
COPS3-216ENST00000579716 TNRC6CQ9HCJ0 1690 aaKnown RBP3.65□□□□□ -1.82
COPS3-216ENST00000579716 PRRC2AP48634 2157 aaKnown RBP3.65□□□□□ -1.82
COPS3-216ENST00000579716 KMT2BQ9UMN6 2715 aaPredicted RBP3.65□□□□□ -1.83
COPS3-216ENST00000579716 KRTAP5-2Q701N4 177 aa3.64□□□□□ -1.83
COPS3-216ENST00000579716 SDK1Q7Z5N4 2213 aa3.63□□□□□ -1.83
COPS3-216ENST00000579716 DEFB131BA0A096LNP1 70 aa3.63□□□□□ -1.83
COPS3-216ENST00000579716 INE1O15225 51 aa3.63□□□□□ -1.83
COPS3-216ENST00000579716 Q6ZQY7 126 aa3.63□□□□□ -1.83
COPS3-216ENST00000579716 LINC00308Q8TCZ7 52 aa3.63□□□□□ -1.83
COPS3-216ENST00000579716 RP1P56715 2156 aa3.62□□□□□ -1.83
COPS3-216ENST00000579716 UNC13CQ8NB66 2214 aa3.62□□□□□ -1.83
COPS3-216ENST00000579716 H3BRN7 92 aa3.62□□□□□ -1.83
COPS3-216ENST00000579716 PRB2P02812 416 aaPredicted RBP3.61□□□□□ -1.83
COPS3-216ENST00000579716 SSC5DA1L4H1 1573 aa3.6□□□□□ -1.83
COPS3-216ENST00000579716 NDUFA1O15239 70 aa3.6□□□□□ -1.83
COPS3-216ENST00000579716 PRR14LQ5THK1 2151 aa3.6□□□□□ -1.83
COPS3-216ENST00000579716 COL4A2P08572 1712 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 M0R2N4 97 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 C14orf177Q52M58 125 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 CCL19Q99731 98 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 ANAPC11Q9NYG5 84 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 ADAMTS9Q9P2N4 1935 aa3.59□□□□□ -1.83
COPS3-216ENST00000579716 FREM1Q5H8C1 2179 aa3.59□□□□□ -1.84
COPS3-216ENST00000579716 TNCP24821 2201 aa3.59□□□□□ -1.84
COPS3-216ENST00000579716 LINC00158P58513 81 aa3.58□□□□□ -1.84
COPS3-216ENST00000579716 KRTAP7-1Q8IUC3 87 aa3.58□□□□□ -1.84
COPS3-216ENST00000579716 TTTY10Q9BZA0 68 aa3.58□□□□□ -1.84
COPS3-216ENST00000579716 ZFHX2Q9C0A1 2572 aaPredicted RBP3.57□□□□□ -1.84
COPS3-216ENST00000579716 LY6G6CO95867 125 aa3.56□□□□□ -1.84
COPS3-216ENST00000579716 LINC00315P59091 139 aa3.56□□□□□ -1.84
COPS3-216ENST00000579716 LINC01590Q5TEZ4 76 aa3.56□□□□□ -1.84
COPS3-216ENST00000579716 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.56□□□□□ -1.84
COPS3-216ENST00000579716 SSBP3-AS1Q7Z2R9 100 aa3.56□□□□□ -1.84
COPS3-216ENST00000579716 KRTAP11-1Q8IUC1 163 aa3.55□□□□□ -1.84
COPS3-216ENST00000579716 MAPK1IP1LQ8NDC0 245 aa3.55□□□□□ -1.84
COPS3-216ENST00000579716 SPTY2D1-AS1A0A0U1RR47 76 aa3.54□□□□□ -1.84
COPS3-216ENST00000579716 CRIP1P50238 77 aa3.54□□□□□ -1.84
COPS3-216ENST00000579716 ZNF318Q5VUA4 2279 aa3.53□□□□□ -1.84
COPS3-216ENST00000579716 PRB1P04280 392 aa3.53□□□□□ -1.84
COPS3-216ENST00000579716 SMIM11BQ8TCY0 68 aa3.53□□□□□ -1.84
COPS3-216ENST00000579716 GOLGA4Q13439 2230 aaKnown RBP3.53□□□□□ -1.84
COPS3-216ENST00000579716 ANGP03950 147 aaKnown RBP3.52□□□□□ -1.85
COPS3-216ENST00000579716 Q8IZM0 81 aa3.52□□□□□ -1.85
COPS3-216ENST00000579716 Q6ZRX8 168 aa3.51□□□□□ -1.85
COPS3-216ENST00000579716 BRWD1Q9NSI6 2320 aa3.51□□□□□ -1.85
COPS3-216ENST00000579716 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
COPS3-216ENST00000579716 Q8N9L7 120 aa3.5□□□□□ -1.85
COPS3-216ENST00000579716 ALPK2Q86TB3 2170 aa3.5□□□□□ -1.85
COPS3-216ENST00000579716 IGKV2D-24A0A075B6R9 120 aa3.49□□□□□ -1.85
COPS3-216ENST00000579716 G3V318 75 aa3.49□□□□□ -1.85
COPS3-216ENST00000579716 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
COPS3-216ENST00000579716 PLAC4Q8WY50 150 aa3.49□□□□□ -1.85
COPS3-216ENST00000579716 CDKN2A-AS1Q9UH64 79 aa3.48□□□□□ -1.85
COPS3-216ENST00000579716 NOTCH2Q04721 2471 aa3.48□□□□□ -1.85
COPS3-216ENST00000579716 LOC730098B7Z3J9 87 aa3.47□□□□□ -1.85
COPS3-216ENST00000579716 C10orf99Q6UWK7 81 aa3.47□□□□□ -1.85
COPS3-216ENST00000579716 IGKV2-28A0A075B6P5 120 aa3.46□□□□□ -1.86
COPS3-216ENST00000579716 IGKV2D-28P01615 120 aa3.46□□□□□ -1.86
COPS3-216ENST00000579716 SEC16AO15027 2179 aa3.46□□□□□ -1.86
COPS3-216ENST00000579716 COL4A4P53420 1690 aaPredicted RBP3.46□□□□□ -1.86
COPS3-216ENST00000579716 GVQW2A0A096LPI5 108 aaPredicted RBP3.45□□□□□ -1.86
COPS3-216ENST00000579716 MED13LQ71F56 2210 aa3.44□□□□□ -1.86
COPS3-216ENST00000579716 A0A096LNT2 108 aa3.42□□□□□ -1.86
COPS3-216ENST00000579716 KRTAP10-8P60410 259 aa3.42□□□□□ -1.86
COPS3-216ENST00000579716 PRB3Q04118 309 aaPredicted RBP3.41□□□□□ -1.86
COPS3-216ENST00000579716 F5P12259 2224 aa3.4□□□□□ -1.86
COPS3-216ENST00000579716 H3BSH0 61 aa3.4□□□□□ -1.87
COPS3-216ENST00000579716 LINC00575Q6W349 94 aa3.4□□□□□ -1.87
COPS3-216ENST00000579716 PP632Q6XCG6 107 aa3.4□□□□□ -1.87
COPS3-216ENST00000579716 TP53AIP1Q9HCN2 124 aa3.4□□□□□ -1.87
COPS3-216ENST00000579716 CACNA1CQ13936 2221 aa3.4□□□□□ -1.87
COPS3-216ENST00000579716 IGKV2-24A0A0C4DH68 120 aa3.39□□□□□ -1.87
COPS3-216ENST00000579716 LYNX1G3V0Z9 82 aa3.39□□□□□ -1.87
COPS3-216ENST00000579716 POLR2KP53803 58 aaKnown RBP3.39□□□□□ -1.87
COPS3-216ENST00000579716 PRO3102Q9H379 93 aa3.38□□□□□ -1.87
COPS3-216ENST00000579716 SPINK13Q1W4C9 94 aa3.37□□□□□ -1.87
COPS3-216ENST00000579716 CRIPTQ9P021 101 aa3.37□□□□□ -1.87
COPS3-216ENST00000579716 PRR9Q5T870 116 aa3.36□□□□□ -1.87
COPS3-216ENST00000579716 Q6ZRN7 208 aaPredicted RBP3.36□□□□□ -1.87
COPS3-216ENST00000579716 KRTAP12-2P59991 146 aa3.34□□□□□ -1.87
COPS3-216ENST00000579716 MINOS1Q5TGZ0 78 aa3.34□□□□□ -1.87
COPS3-216ENST00000579716 COX6B2Q6YFQ2 88 aa3.34□□□□□ -1.87
COPS3-216ENST00000579716 DSCR10P59022 87 aa3.33□□□□□ -1.88
COPS3-216ENST00000579716 KRTAP13-2Q52LG2 175 aa3.33□□□□□ -1.88
COPS3-216ENST00000579716 KRTAP5-5Q701N2 237 aaPredicted RBP3.33□□□□□ -1.88
COPS3-216ENST00000579716 K7EQZ3 153 aa3.32□□□□□ -1.88
COPS3-216ENST00000579716 RPL39P62891 51 aaKnown RBP3.32□□□□□ -1.88
COPS3-216ENST00000579716 UBE2DNLQ8IWF7 75 aa3.32□□□□□ -1.88
COPS3-216ENST00000579716 C6orf48Q9UBA6 75 aa3.32□□□□□ -1.88
COPS3-216ENST00000579716 PRCDQ00LT1 54 aa3.31□□□□□ -1.88
COPS3-216ENST00000579716 KRTAP13-3Q3SY46 172 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms