RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 H0Y8G0 127 aa8.9□□□□□ -0.98
SS18-212ENST00000579061 PLNP26678 52 aa8.9□□□□□ -0.98
SS18-212ENST00000579061 FABP4P15090 132 aa8.89□□□□□ -0.99
SS18-212ENST00000579061 RPL13AP40429 203 aaKnown RBP8.89□□□□□ -0.99
SS18-212ENST00000579061 NDUFA12Q9UI09 145 aa8.89□□□□□ -0.99
SS18-212ENST00000579061 MYMXA0A1B0GTQ4 84 aa8.88□□□□□ -0.99
SS18-212ENST00000579061 KRTAP13-1Q8IUC0 172 aa8.88□□□□□ -0.99
SS18-212ENST00000579061 IGKV2-28A0A075B6P5 120 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 LEPROTO15243 131 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 DPM2O94777 84 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 IGKV2D-28P01615 120 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 SMIM13P0DJ93 91 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 MEIG1Q5JSS6 88 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 PLEKHB2Q96CS7 222 aa8.87□□□□□ -0.99
SS18-212ENST00000579061 A0A0U1RRA0 63 aa8.86□□□□□ -0.99
SS18-212ENST00000579061 UBE2AP49459 152 aa8.86□□□□□ -0.99
SS18-212ENST00000579061 HERVK_113P61574 105 aa8.86□□□□□ -0.99
SS18-212ENST00000579061 Q8NDZ9 215 aa8.86□□□□□ -0.99
SS18-212ENST00000579061 MAP1LC3CQ9BXW4 147 aa8.86□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BKO60814 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 IGKCP01834 107 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BJP06899 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BOP23527 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BBP33778 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BDP58876 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BCP62807 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST2H2BEQ16778 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BHQ93079 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BNQ99877 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 HIST1H2BMQ99879 126 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 TMEM126AQ9H061 195 aa8.85□□□□□ -0.99
SS18-212ENST00000579061 M0R378 163 aa8.84□□□□□ -0.99
SS18-212ENST00000579061 NMUP48645 174 aa8.84□□□□□ -0.99
SS18-212ENST00000579061 MIR7-3HGQ8N6C7 128 aa8.84□□□□□ -0.99
SS18-212ENST00000579061 J3QQQ9 107 aa8.83□□□□□ -1
SS18-212ENST00000579061 TSPEAR-AS2P59090 65 aa8.83□□□□□ -1
SS18-212ENST00000579061 FAM19A1Q7Z5A9 133 aa8.82□□□□□ -1
SS18-212ENST00000579061 BOD1L2Q8IYS8 172 aa8.82□□□□□ -1
SS18-212ENST00000579061 PMCHL2Q9BQD1 86 aa8.82□□□□□ -1
SS18-212ENST00000579061 IGKV2D-26A0A0A0MRZ7 120 aa8.81□□□□□ -1
SS18-212ENST00000579061 LOC107984156A0A0G2JMH3 177 aa8.81□□□□□ -1
SS18-212ENST00000579061 TMEM238C9JI98 176 aa8.81□□□□□ -1
SS18-212ENST00000579061 ARL17AQ8IVW1 177 aa8.81□□□□□ -1
SS18-212ENST00000579061 CRYGAP11844 174 aa8.8□□□□□ -1
SS18-212ENST00000579061 LRP2P98164 4655 aa8.8□□□□□ -1
SS18-212ENST00000579061 SYS1-DBNDD2H3BUS1 97 aa8.79□□□□□ -1
SS18-212ENST00000579061 LGALS3P17931 250 aaKnown RBP8.79□□□□□ -1
SS18-212ENST00000579061 PRLHP81277 87 aa8.79□□□□□ -1
SS18-212ENST00000579061 FAM229BQ4G0N7 80 aa8.79□□□□□ -1
SS18-212ENST00000579061 A0A087X002 238 aa8.78□□□□□ -1
SS18-212ENST00000579061 E9PLD3 99 aa8.78□□□□□ -1
SS18-212ENST00000579061 PRYO14603 147 aa8.78□□□□□ -1
SS18-212ENST00000579061 COA6Q5JTJ3 125 aaKnown RBP8.78□□□□□ -1
SS18-212ENST00000579061 LINC01545Q5VT33 79 aa8.77□□□□□ -1.01
SS18-212ENST00000579061 PET117Q6UWS5 81 aa8.77□□□□□ -1.01
SS18-212ENST00000579061 KCNQ1DNQ9H478 68 aa8.77□□□□□ -1.01
SS18-212ENST00000579061 UBR4Q5T4S7 5183 aa8.76□□□□□ -1.01
SS18-212ENST00000579061 NCR3O14931 201 aa8.76□□□□□ -1.01
SS18-212ENST00000579061 TYMSOSQ8TAI1 123 aa8.76□□□□□ -1.01
SS18-212ENST00000579061 TRBV10-2A0A0K0K1G8 114 aa8.75□□□□□ -1.01
SS18-212ENST00000579061 S100A6P06703 90 aa8.75□□□□□ -1.01
SS18-212ENST00000579061 SPRR1AP35321 89 aa8.75□□□□□ -1.01
SS18-212ENST00000579061 LINC00337Q8N6G1 96 aa8.75□□□□□ -1.01
SS18-212ENST00000579061 TMA7Q9Y2S6 64 aaKnown RBP8.75□□□□□ -1.01
SS18-212ENST00000579061 DAND5Q8N907 189 aa8.74□□□□□ -1.01
SS18-212ENST00000579061 MIEN1Q9BRT3 115 aa8.74□□□□□ -1.01
SS18-212ENST00000579061 A0A0J9YXY3 114 aa8.73□□□□□ -1.01
SS18-212ENST00000579061 NDUFC2O95298 119 aa8.73□□□□□ -1.01
SS18-212ENST00000579061 S100A12P80511 92 aa8.73□□□□□ -1.01
SS18-212ENST00000579061 ANAPC11Q9NYG5 84 aa8.73□□□□□ -1.01
SS18-212ENST00000579061 TRBV10-3A0A0K0K1G6 114 aa8.72□□□□□ -1.01
SS18-212ENST00000579061 KRTAP4-16G5E9R7 235 aaPredicted RBP8.72□□□□□ -1.01
SS18-212ENST00000579061 C3orf79P0CE67 100 aa8.72□□□□□ -1.01
SS18-212ENST00000579061 KRTAP13-2Q52LG2 175 aa8.72□□□□□ -1.01
SS18-212ENST00000579061 HIGD2AQ9BW72 106 aa8.72□□□□□ -1.01
SS18-212ENST00000579061 SPANXB1Q9NS25 103 aaPredicted RBP8.72□□□□□ -1.01
SS18-212ENST00000579061 ETDCA0A1B0GVM5 59 aa8.7□□□□□ -1.02
SS18-212ENST00000579061 DDTP30046 118 aa8.7□□□□□ -1.02
SS18-212ENST00000579061 ZNF706Q9Y5V0 76 aaPredicted RBP8.7□□□□□ -1.02
SS18-212ENST00000579061 ADAMTSL4-AS1Q5T5F5 129 aa8.69□□□□□ -1.02
SS18-212ENST00000579061 SPRR4Q96PI1 79 aa8.69□□□□□ -1.02
SS18-212ENST00000579061 TIMM17BO60830 172 aa8.68□□□□□ -1.02
SS18-212ENST00000579061 CTAG1AP78358 180 aa8.68□□□□□ -1.02
SS18-212ENST00000579061 SOSTDC1Q6X4U4 206 aa8.68□□□□□ -1.02
SS18-212ENST00000579061 IGLV6-57P01721 117 aa8.67□□□□□ -1.02
SS18-212ENST00000579061 KRTDAPP60985 99 aa8.67□□□□□ -1.02
SS18-212ENST00000579061 C20orf202A1L168 122 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 TSPAN13O95857 204 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 S100A2P29034 98 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 S100A7L2Q5SY68 101 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 LINC00304Q8N9R0 145 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 SMCR5Q8TEV8 140 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 LITAFQ99732 161 aa8.66□□□□□ -1.02
SS18-212ENST00000579061 ZNF815PA8K554 130 aa8.65□□□□□ -1.02
SS18-212ENST00000579061 B5MCH6 92 aa8.65□□□□□ -1.02
SS18-212ENST00000579061 EIF4EBP3O60516 100 aaPredicted RBP8.65□□□□□ -1.02
SS18-212ENST00000579061 AKR1D1P51857 326 aa8.65□□□□□ -1.02
SS18-212ENST00000579061 NPC2P61916 151 aa8.65□□□□□ -1.02
SS18-212ENST00000579061 PRR4Q16378 134 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms