RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 CRYGAP11844 174 aa9.25□□□□□ -0.93
SF3B3-215ENST00000577085 FAM19A1Q7Z5A9 133 aa9.25□□□□□ -0.93
SF3B3-215ENST00000577085 SLC7A5P1Q8MH63 180 aa9.25□□□□□ -0.93
SF3B3-215ENST00000577085 LINC00587B1AMM8 73 aa9.24□□□□□ -0.93
SF3B3-215ENST00000577085 HSPB8Q9UJY1 196 aa9.24□□□□□ -0.93
SF3B3-215ENST00000577085 SERF1AO75920 110 aa9.23□□□□□ -0.93
SF3B3-215ENST00000577085 HERV-K104P63124 156 aa9.23□□□□□ -0.93
SF3B3-215ENST00000577085 TMEM126AQ9H061 195 aa9.23□□□□□ -0.93
SF3B3-215ENST00000577085 TMEM238C9JI98 176 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 SMIM13P0DJ93 91 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 PLNP26678 52 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 PRLHP81277 87 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 TYMSOSQ8TAI1 123 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 LRP2P98164 4655 aa9.22□□□□□ -0.93
SF3B3-215ENST00000577085 MYMXA0A1B0GTQ4 84 aa9.21□□□□□ -0.94
SF3B3-215ENST00000577085 FABP4P15090 132 aa9.21□□□□□ -0.94
SF3B3-215ENST00000577085 MAP1LC3CQ9BXW4 147 aa9.21□□□□□ -0.94
SF3B3-215ENST00000577085 NDUFA12Q9UI09 145 aa9.21□□□□□ -0.94
SF3B3-215ENST00000577085 HERVK_113P61574 105 aa9.2□□□□□ -0.94
SF3B3-215ENST00000577085 PRR4Q16378 134 aa9.2□□□□□ -0.94
SF3B3-215ENST00000577085 KRTAP13-1Q8IUC0 172 aa9.2□□□□□ -0.94
SF3B3-215ENST00000577085 BOD1L2Q8IYS8 172 aa9.2□□□□□ -0.94
SF3B3-215ENST00000577085 A0A087X002 238 aa9.19□□□□□ -0.94
SF3B3-215ENST00000577085 M0R378 163 aa9.19□□□□□ -0.94
SF3B3-215ENST00000577085 TSPAN13O95857 204 aa9.19□□□□□ -0.94
SF3B3-215ENST00000577085 MIR7-3HGQ8N6C7 128 aa9.19□□□□□ -0.94
SF3B3-215ENST00000577085 ANAPC11Q9NYG5 84 aa9.19□□□□□ -0.94
SF3B3-215ENST00000577085 Q8NDZ9 215 aa9.18□□□□□ -0.94
SF3B3-215ENST00000577085 PLEKHB2Q96CS7 222 aa9.18□□□□□ -0.94
SF3B3-215ENST00000577085 IGKV2D-26A0A0A0MRZ7 120 aa9.17□□□□□ -0.94
SF3B3-215ENST00000577085 COLCA2A8K830 154 aa9.17□□□□□ -0.94
SF3B3-215ENST00000577085 DPM2O94777 84 aa9.17□□□□□ -0.94
SF3B3-215ENST00000577085 S100A12P80511 92 aa9.17□□□□□ -0.94
SF3B3-215ENST00000577085 FAM229BQ4G0N7 80 aa9.17□□□□□ -0.94
SF3B3-215ENST00000577085 NCR3O14931 201 aa9.16□□□□□ -0.94
SF3B3-215ENST00000577085 LEPROTO15243 131 aa9.16□□□□□ -0.94
SF3B3-215ENST00000577085 LINC00310P59036 64 aa9.16□□□□□ -0.94
SF3B3-215ENST00000577085 HIGD2AQ9BW72 106 aa9.16□□□□□ -0.94
SF3B3-215ENST00000577085 IGKCP01834 107 aa9.15□□□□□ -0.94
SF3B3-215ENST00000577085 LGALS3P17931 250 aaKnown RBP9.15□□□□□ -0.94
SF3B3-215ENST00000577085 J3QQQ9 107 aa9.14□□□□□ -0.95
SF3B3-215ENST00000577085 PMCHL2Q9BQD1 86 aa9.14□□□□□ -0.95
SF3B3-215ENST00000577085 MIEN1Q9BRT3 115 aa9.14□□□□□ -0.95
SF3B3-215ENST00000577085 PRYO14603 147 aa9.13□□□□□ -0.95
SF3B3-215ENST00000577085 NMUP48645 174 aa9.13□□□□□ -0.95
SF3B3-215ENST00000577085 TSPEAR-AS2P59090 65 aa9.12□□□□□ -0.95
SF3B3-215ENST00000577085 RNF213Q63HN8 5207 aa9.12□□□□□ -0.95
SF3B3-215ENST00000577085 ETDCA0A1B0GVM5 59 aa9.11□□□□□ -0.95
SF3B3-215ENST00000577085 DAND5Q8N907 189 aa9.11□□□□□ -0.95
SF3B3-215ENST00000577085 ZNF706Q9Y5V0 76 aaPredicted RBP9.11□□□□□ -0.95
SF3B3-215ENST00000577085 KRTAP13-2Q52LG2 175 aa9.1□□□□□ -0.95
SF3B3-215ENST00000577085 LINC00304Q8N9R0 145 aa9.1□□□□□ -0.95
SF3B3-215ENST00000577085 TRBV10-3A0A0K0K1G6 114 aa9.08□□□□□ -0.96
SF3B3-215ENST00000577085 LINC00337Q8N6G1 96 aa9.08□□□□□ -0.96
SF3B3-215ENST00000577085 KCNQ1DNQ9H478 68 aa9.08□□□□□ -0.96
SF3B3-215ENST00000577085 LPAP08519 4548 aa9.08□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BKO60814 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BJP06899 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BOP23527 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 DDTP30046 118 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BBP33778 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BDP58876 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BCP62807 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST2H2BEQ16778 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-215ENST00000577085 S100A7L2Q5SY68 101 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BHQ93079 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 SPRR4Q96PI1 79 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BNQ99877 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 HIST1H2BMQ99879 126 aa9.06□□□□□ -0.96
SF3B3-215ENST00000577085 SPANXB1Q9NS25 103 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-215ENST00000577085 TRBV10-2A0A0K0K1G8 114 aa9.05□□□□□ -0.96
SF3B3-215ENST00000577085 SYS1-DBNDD2H3BUS1 97 aa9.05□□□□□ -0.96
SF3B3-215ENST00000577085 LOC107984156A0A0G2JMH3 177 aa9.04□□□□□ -0.96
SF3B3-215ENST00000577085 E9PLD3 99 aa9.04□□□□□ -0.96
SF3B3-215ENST00000577085 SPRR1AP35321 89 aa9.04□□□□□ -0.96
SF3B3-215ENST00000577085 ARL17AQ8IVW1 177 aa9.04□□□□□ -0.96
SF3B3-215ENST00000577085 NPC2P61916 151 aa9.03□□□□□ -0.96
SF3B3-215ENST00000577085 C4orf48Q5BLP8 95 aa9.03□□□□□ -0.96
SF3B3-215ENST00000577085 SMCR5Q8TEV8 140 aa9.03□□□□□ -0.96
SF3B3-215ENST00000577085 A0A0J9YXY3 114 aa9.02□□□□□ -0.97
SF3B3-215ENST00000577085 NDUFC2O95298 119 aa9.02□□□□□ -0.97
SF3B3-215ENST00000577085 C3orf22Q8N5N4 141 aa9.02□□□□□ -0.97
SF3B3-215ENST00000577085 PET117Q6UWS5 81 aa9.01□□□□□ -0.97
SF3B3-215ENST00000577085 RETNLBQ9BQ08 111 aa9.01□□□□□ -0.97
SF3B3-215ENST00000577085 PPDPFQ9H3Y8 114 aa9.01□□□□□ -0.97
SF3B3-215ENST00000577085 CTAG1AP78358 180 aa9□□□□□ -0.97
SF3B3-215ENST00000577085 SPAG11AQ6PDA7 123 aa9□□□□□ -0.97
SF3B3-215ENST00000577085 B5MCH6 92 aa8.99□□□□□ -0.97
SF3B3-215ENST00000577085 KRTAP4-16G5E9R7 235 aaPredicted RBP8.99□□□□□ -0.97
SF3B3-215ENST00000577085 LINC01545Q5VT33 79 aa8.99□□□□□ -0.97
SF3B3-215ENST00000577085 CBY1Q9Y3M2 126 aa8.99□□□□□ -0.97
SF3B3-215ENST00000577085 TRAV23DV6A0A075B6W5 121 aa8.98□□□□□ -0.97
SF3B3-215ENST00000577085 JOSD1Q15040 202 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-215ENST00000577085 ADAMTSL4-AS1Q5T5F5 129 aa8.98□□□□□ -0.97
SF3B3-215ENST00000577085 GAGE2AQ6NT46 116 aa8.98□□□□□ -0.97
SF3B3-215ENST00000577085 IGLV6-57P01721 117 aa8.97□□□□□ -0.97
SF3B3-215ENST00000577085 HINT1P49773 126 aaPredicted RBP8.97□□□□□ -0.97
SF3B3-215ENST00000577085 KRTDAPP60985 99 aa8.97□□□□□ -0.97
SF3B3-215ENST00000577085 Q6ZRX8 168 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms