RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DPH3P1Q9H4G8 78 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 Q9H521 79 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 IGHV1-24A0A0C4DH33 117 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 PNMA8CA0A1B0GUJ8 204 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 OOSP1A8MZH6 123 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 ERC2-IT1O76042 136 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 IGKV1-17P01599 117 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 SPINK8P0C7L1 97 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 MT1HP80294 61 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 LINC00269Q8N2A0 174 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 Q8TAT8 98 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 DYNLRB2Q8TF09 96 aa2.9□□□□□ -1.95
VPS53-219ENST00000576019 NOP16Q9Y3C1 178 aaKnown RBP2.9□□□□□ -1.95
VPS53-219ENST00000576019 TRAV12-2A0A075B6T6 113 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 A0A087WSZ3 146 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 TRAV14DV4A0A0A6YYC5 116 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 KCNRGQ8N5I3 272 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 Q96M85 177 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
VPS53-219ENST00000576019 IGKV1D-17A0A075B6S4 117 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 A6NN06 94 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 ZNF736B4DX44 427 aaPredicted RBP2.88□□□□□ -1.95
VPS53-219ENST00000576019 HMGN2P05204 90 aaKnown RBP2.88□□□□□ -1.95
VPS53-219ENST00000576019 CCL18P55774 89 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 PDE6HQ13956 83 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 ATOH7Q8N100 152 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 AGPAT4-IT1Q9H0P7 198 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 NAA60Q9H7X0 242 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 SAR1AQ9NR31 198 aa2.88□□□□□ -1.95
VPS53-219ENST00000576019 GEMIN2O14893 280 aaKnown RBP2.87□□□□□ -1.95
VPS53-219ENST00000576019 EDF1O60869 148 aaKnown RBP2.87□□□□□ -1.95
VPS53-219ENST00000576019 PITX3O75364 302 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 IFITM1P13164 125 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 KRTAP12-2P59991 146 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 MIR22HGQ0VDD5 57 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 C10orf128Q5T292 105 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 LINC01545Q5VT33 79 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 MIC13Q5XKP0 118 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 Q8N6K4 173 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 LINC00526Q96FQ7 95 aa2.87□□□□□ -1.95
VPS53-219ENST00000576019 Q56UQ5 140 aa2.86□□□□□ -1.95
VPS53-219ENST00000576019 C2orf82Q6UX34 121 aa2.86□□□□□ -1.95
VPS53-219ENST00000576019 Q6ZUT4 128 aa2.86□□□□□ -1.95
VPS53-219ENST00000576019 SMIM7Q9BQ49 75 aa2.86□□□□□ -1.95
VPS53-219ENST00000576019 PRO1933Q9H354 126 aa2.86□□□□□ -1.95
VPS53-219ENST00000576019 TCRBV3S1A0A5B6 114 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 M0R2P5 195 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 YPEL1O60688 119 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 PIPP12273 146 aaPredicted RBP2.85□□□□□ -1.95
VPS53-219ENST00000576019 ASB16-AS1Q495Z4 193 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 C1orf137Q5JT78 98 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 Q6AWC8 147 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 MRPL54Q6P161 138 aaKnown RBP2.85□□□□□ -1.95
VPS53-219ENST00000576019 CASC2Q6XLA1 102 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 TXNDC17Q9BRA2 123 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 SEC11CQ9BY50 192 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 DPY30Q9C005 99 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 MED9Q9NWA0 146 aa2.85□□□□□ -1.95
VPS53-219ENST00000576019 AHNAK2Q8IVF2 5795 aa2.84□□□□□ -1.95
VPS53-219ENST00000576019 SMIM31A0A1B0GVY4 71 aa2.84□□□□□ -1.95
VPS53-219ENST00000576019 ZNF833PQ6ZTB9 187 aa2.84□□□□□ -1.95
VPS53-219ENST00000576019 FP248Q71RG6 208 aaPredicted RBP2.84□□□□□ -1.95
VPS53-219ENST00000576019 COPS9Q8WXC6 57 aa2.84□□□□□ -1.95
VPS53-219ENST00000576019 SPRR5A0A1B0GTR4 108 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 TMEM262E9PQX1 116 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 IGLC1P0CG04 106 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 CNBPP62633 177 aaKnown RBP2.83□□□□□ -1.96
VPS53-219ENST00000576019 ATP11AUNQ6ZP68 121 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 SVBPQ8N300 66 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 LINC00846Q9NV44 126 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 SERP1Q9Y6X1 66 aa2.83□□□□□ -1.96
VPS53-219ENST00000576019 TRBV6-8A0A0A6YYG3 113 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 HYPMO75409 117 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 C9orf153Q5TBE3 101 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 ATP6V0E2Q8NHE4 81 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 LSM10Q969L4 123 aaKnown RBP2.82□□□□□ -1.96
VPS53-219ENST00000576019 PRO0461Q9UI25 63 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 LINC00312Q9Y6C7 94 aa2.82□□□□□ -1.96
VPS53-219ENST00000576019 MCRIP1C9JLW8 97 aa2.81□□□□□ -1.96
VPS53-219ENST00000576019 HTN3P15516 51 aa2.81□□□□□ -1.96
VPS53-219ENST00000576019 AQP10Q96PS8 301 aa2.81□□□□□ -1.96
VPS53-219ENST00000576019 SPART-AS1P0CW21 52 aa2.8□□□□□ -1.96
VPS53-219ENST00000576019 CBLN1P23435 193 aa2.8□□□□□ -1.96
VPS53-219ENST00000576019 KRTAP19-6Q3LI70 58 aa2.8□□□□□ -1.96
VPS53-219ENST00000576019 KRTAP26-1Q6PEX3 210 aa2.8□□□□□ -1.96
VPS53-219ENST00000576019 ZNF431Q8TF32 576 aaPredicted RBP2.8□□□□□ -1.96
VPS53-219ENST00000576019 F8W1H4 67 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 J3QLW9 94 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 LINC00032P0C843 101 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 IL7P13232 177 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 KRTAP19-2Q3LHN2 52 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 SLC25A26Q70HW3 274 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 VAMP8Q9BV40 100 aa2.79□□□□□ -1.96
VPS53-219ENST00000576019 MT-ATP8P03928 68 aa2.78□□□□□ -1.96
VPS53-219ENST00000576019 EDDM3BP56851 147 aa2.78□□□□□ -1.96
VPS53-219ENST00000576019 COA5Q86WW8 74 aa2.78□□□□□ -1.96
VPS53-219ENST00000576019 KRTAP4-1Q9BYQ7 146 aa2.78□□□□□ -1.96
VPS53-219ENST00000576019 GYPBP06028 91 aa2.77□□□□□ -1.97
VPS53-219ENST00000576019 Q0VG73 95 aa2.77□□□□□ -1.97
VPS53-219ENST00000576019 FAM74A1Q5RGS3 127 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms