RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SLC7A5P1Q8MH63 180 aa4.97□□□□□ -1.61
VPS53-214ENST00000572607 IFI27L1Q96BM0 104 aa4.97□□□□□ -1.61
VPS53-214ENST00000572607 C22orf24Q9Y442 160 aa4.97□□□□□ -1.61
VPS53-214ENST00000572607 TRAV12-1A0A0B4J245 112 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 IGLV5-39A0A0G2JS06 123 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 C11orf86A6NJI1 115 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 NUPR1O60356 82 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 TRGC2P03986 189 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 PFN2P35080 140 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 MRPL55Q7Z7F7 128 aaKnown RBP4.96□□□□□ -1.62
VPS53-214ENST00000572607 NKAPP1Q8N9T2 125 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 TP73-AS1Q9UF72 201 aa4.96□□□□□ -1.62
VPS53-214ENST00000572607 COX17Q14061 63 aa4.95□□□□□ -1.62
VPS53-214ENST00000572607 ODF1Q14990 250 aa4.95□□□□□ -1.62
VPS53-214ENST00000572607 KRTAP7-1Q8IUC3 87 aa4.95□□□□□ -1.62
VPS53-214ENST00000572607 CDIP1Q9H305 208 aa4.95□□□□□ -1.62
VPS53-214ENST00000572607 ERG28Q9UKR5 140 aa4.95□□□□□ -1.62
VPS53-214ENST00000572607 H0Y8G0 127 aa4.94□□□□□ -1.62
VPS53-214ENST00000572607 H0Y9J4 135 aa4.94□□□□□ -1.62
VPS53-214ENST00000572607 LEPROTL1O95214 131 aa4.94□□□□□ -1.62
VPS53-214ENST00000572607 RPL24P83731 157 aaKnown RBP4.94□□□□□ -1.62
VPS53-214ENST00000572607 KRTAP11-1Q8IUC1 163 aa4.94□□□□□ -1.62
VPS53-214ENST00000572607 FAM19A2Q8N3H0 131 aa4.94□□□□□ -1.62
VPS53-214ENST00000572607 GAGE10A6NGK3 116 aa4.93□□□□□ -1.62
VPS53-214ENST00000572607 ATP6V1G1O75348 118 aa4.93□□□□□ -1.62
VPS53-214ENST00000572607 SERF1AO75920 110 aa4.93□□□□□ -1.62
VPS53-214ENST00000572607 ZNF625Q96I27 306 aaPredicted RBP4.93□□□□□ -1.62
VPS53-214ENST00000572607 HSPB8Q9UJY1 196 aa4.93□□□□□ -1.62
VPS53-214ENST00000572607 TMEM223A0PJW6 202 aa4.92□□□□□ -1.62
VPS53-214ENST00000572607 ZNF861PO60384 105 aa4.92□□□□□ -1.62
VPS53-214ENST00000572607 RPL28P46779 137 aaKnown RBP4.92□□□□□ -1.62
VPS53-214ENST00000572607 LINC00158P58513 81 aa4.92□□□□□ -1.62
VPS53-214ENST00000572607 MEIG1Q5JSS6 88 aa4.92□□□□□ -1.62
VPS53-214ENST00000572607 LINC00167Q96N53 147 aa4.92□□□□□ -1.62
VPS53-214ENST00000572607 IGLV5-37A0A075B6J1 123 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 RPL37AP8A6NKH3 93 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 COLCA2A8K830 154 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 LINC00587B1AMM8 73 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 BCE1O60756 84 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 KRTAP10-8P60410 259 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 HERVK_113P61574 105 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 SND1-IT1Q9HBX3 110 aa4.91□□□□□ -1.62
VPS53-214ENST00000572607 IGLV1-50A0A075B6I6 118 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 A0A0U1RRA0 63 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 FABP4P15090 132 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 PLNP26678 52 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 RPL13AP40429 203 aaKnown RBP4.9□□□□□ -1.63
VPS53-214ENST00000572607 UBE2AP49459 152 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 HERV-K104P63124 156 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 MAP1LC3CQ9BXW4 147 aa4.9□□□□□ -1.63
VPS53-214ENST00000572607 IGKV2-28A0A075B6P5 120 aa4.89□□□□□ -1.63
VPS53-214ENST00000572607 MYMXA0A1B0GTQ4 84 aa4.89□□□□□ -1.63
VPS53-214ENST00000572607 IGKV2D-28P01615 120 aa4.89□□□□□ -1.63
VPS53-214ENST00000572607 PRR26Q8N8Z3 221 aa4.89□□□□□ -1.63
VPS53-214ENST00000572607 LPAP08519 4548 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 DPM2O94777 84 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 SMIM13P0DJ93 91 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 VPREB1P12018 145 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 PLEKHB2Q96CS7 222 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 NDUFA12Q9UI09 145 aa4.88□□□□□ -1.63
VPS53-214ENST00000572607 LEPROTO15243 131 aa4.87□□□□□ -1.63
VPS53-214ENST00000572607 SCO1O75880 301 aa4.87□□□□□ -1.63
VPS53-214ENST00000572607 IGKCP01834 107 aa4.87□□□□□ -1.63
VPS53-214ENST00000572607 LGALS3P17931 250 aaKnown RBP4.87□□□□□ -1.63
VPS53-214ENST00000572607 KRTAP1-4P0C5Y4 121 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 NMUP48645 174 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 S100A12P80511 92 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 FAM19A1Q7Z5A9 133 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 BOD1L2Q8IYS8 172 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 MIR7-3HGQ8N6C7 128 aa4.86□□□□□ -1.63
VPS53-214ENST00000572607 J3QQQ9 107 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 M0R378 163 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BKO60814 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BJP06899 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 CRYGAP11844 174 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BOP23527 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BBP33778 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BDP58876 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BCP62807 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST2H2BEQ16778 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BHQ93079 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BNQ99877 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 HIST1H2BMQ99879 126 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 PMCHL2Q9BQD1 86 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 MIEN1Q9BRT3 115 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 TMEM126AQ9H061 195 aa4.85□□□□□ -1.63
VPS53-214ENST00000572607 IGKV2D-26A0A0A0MRZ7 120 aa4.84□□□□□ -1.63
VPS53-214ENST00000572607 TMEM238C9JI98 176 aa4.84□□□□□ -1.63
VPS53-214ENST00000572607 PRLHP81277 87 aa4.84□□□□□ -1.63
VPS53-214ENST00000572607 SYS1-DBNDD2H3BUS1 97 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 PRYO14603 147 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 NCR3O14931 201 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 TSPEAR-AS2P59090 65 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 KRTAP15-1Q3LI76 137 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 KRTAP13-1Q8IUC0 172 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 Q8NDZ9 215 aa4.83□□□□□ -1.64
VPS53-214ENST00000572607 E9PLD3 99 aa4.82□□□□□ -1.64
VPS53-214ENST00000572607 PET117Q6UWS5 81 aa4.82□□□□□ -1.64
VPS53-214ENST00000572607 TYMSOSQ8TAI1 123 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms