RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 IGKV2-28A0A075B6P5 120 aa12.1□□□□□ -0.47
NUP88-204ENST00000572290 IGKV2D-28P01615 120 aa12.1□□□□□ -0.47
NUP88-204ENST00000572290 HERV-K104P63124 156 aa12.1□□□□□ -0.47
NUP88-204ENST00000572290 MEIG1Q5JSS6 88 aa12.1□□□□□ -0.47
NUP88-204ENST00000572290 NDUFA12Q9UI09 145 aa12.1□□□□□ -0.47
NUP88-204ENST00000572290 DPM2O94777 84 aa12.09□□□□□ -0.47
NUP88-204ENST00000572290 SMIM13P0DJ93 91 aa12.09□□□□□ -0.47
NUP88-204ENST00000572290 Q8NDZ9 215 aa12.09□□□□□ -0.47
NUP88-204ENST00000572290 MYMXA0A1B0GTQ4 84 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BKO60814 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 ATP6V1G1O75348 118 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BJP06899 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BOP23527 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BBP33778 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BDP58876 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BCP62807 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST2H2BEQ16778 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BHQ93079 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BNQ99877 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 HIST1H2BMQ99879 126 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 PMCHL2Q9BQD1 86 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 MAP1LC3CQ9BXW4 147 aa12.08□□□□□ -0.48
NUP88-204ENST00000572290 LINC00587B1AMM8 73 aa12.07□□□□□ -0.48
NUP88-204ENST00000572290 LEPROTO15243 131 aa12.07□□□□□ -0.48
NUP88-204ENST00000572290 IGKCP01834 107 aa12.07□□□□□ -0.48
NUP88-204ENST00000572290 UBE2AP49459 152 aa12.06□□□□□ -0.48
NUP88-204ENST00000572290 HERVK_113P61574 105 aa12.06□□□□□ -0.48
NUP88-204ENST00000572290 PLEKHB2Q96CS7 222 aa12.06□□□□□ -0.48
NUP88-204ENST00000572290 TSPEAR-AS2P59090 65 aa12.05□□□□□ -0.48
NUP88-204ENST00000572290 MIR7-3HGQ8N6C7 128 aa12.05□□□□□ -0.48
NUP88-204ENST00000572290 UBR4Q5T4S7 5183 aa12.05□□□□□ -0.48
NUP88-204ENST00000572290 J3QQQ9 107 aa12.03□□□□□ -0.48
NUP88-204ENST00000572290 RPL13AP40429 203 aaKnown RBP12.03□□□□□ -0.48
NUP88-204ENST00000572290 KRTAP13-1Q8IUC0 172 aa12.03□□□□□ -0.48
NUP88-204ENST00000572290 TMEM126AQ9H061 195 aa12.03□□□□□ -0.48
NUP88-204ENST00000572290 TMEM238C9JI98 176 aa12.02□□□□□ -0.49
NUP88-204ENST00000572290 M0R378 163 aa12.01□□□□□ -0.49
NUP88-204ENST00000572290 BOD1L2Q8IYS8 172 aa12.01□□□□□ -0.49
NUP88-204ENST00000572290 LGALS3P17931 250 aaKnown RBP12□□□□□ -0.49
NUP88-204ENST00000572290 FAM19A1Q7Z5A9 133 aa12□□□□□ -0.49
NUP88-204ENST00000572290 SYS1-DBNDD2H3BUS1 97 aa11.99□□□□□ -0.49
NUP88-204ENST00000572290 NMUP48645 174 aa11.99□□□□□ -0.49
NUP88-204ENST00000572290 PRLHP81277 87 aa11.98□□□□□ -0.49
NUP88-204ENST00000572290 NCR3O14931 201 aa11.96□□□□□ -0.49
NUP88-204ENST00000572290 E9PLD3 99 aa11.95□□□□□ -0.5
NUP88-204ENST00000572290 DAND5Q8N907 189 aa11.95□□□□□ -0.5
NUP88-204ENST00000572290 LRP2P98164 4655 aa11.95□□□□□ -0.5
NUP88-204ENST00000572290 IGKV2D-26A0A0A0MRZ7 120 aa11.94□□□□□ -0.5
NUP88-204ENST00000572290 CRYGAP11844 174 aa11.94□□□□□ -0.5
NUP88-204ENST00000572290 COA6Q5JTJ3 125 aaKnown RBP11.94□□□□□ -0.5
NUP88-204ENST00000572290 PET117Q6UWS5 81 aa11.94□□□□□ -0.5
NUP88-204ENST00000572290 A0A087X002 238 aa11.93□□□□□ -0.5
NUP88-204ENST00000572290 LINC01545Q5VT33 79 aa11.93□□□□□ -0.5
NUP88-204ENST00000572290 ANAPC11Q9NYG5 84 aa11.93□□□□□ -0.5
NUP88-204ENST00000572290 LOC107984156A0A0G2JMH3 177 aa11.92□□□□□ -0.5
NUP88-204ENST00000572290 ARL17AQ8IVW1 177 aa11.92□□□□□ -0.5
NUP88-204ENST00000572290 PRYO14603 147 aa11.91□□□□□ -0.5
NUP88-204ENST00000572290 TYMSOSQ8TAI1 123 aa11.9□□□□□ -0.5
NUP88-204ENST00000572290 MIEN1Q9BRT3 115 aa11.9□□□□□ -0.5
NUP88-204ENST00000572290 A0A0J9YXY3 114 aa11.89□□□□□ -0.51
NUP88-204ENST00000572290 C3orf79P0CE67 100 aa11.89□□□□□ -0.51
NUP88-204ENST00000572290 FAM229BQ4G0N7 80 aa11.89□□□□□ -0.51
NUP88-204ENST00000572290 HIGD2AQ9BW72 106 aa11.89□□□□□ -0.51
NUP88-204ENST00000572290 KCNQ1DNQ9H478 68 aa11.89□□□□□ -0.51
NUP88-204ENST00000572290 TRBV10-3A0A0K0K1G6 114 aa11.88□□□□□ -0.51
NUP88-204ENST00000572290 SPRR1AP35321 89 aa11.87□□□□□ -0.51
NUP88-204ENST00000572290 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
NUP88-204ENST00000572290 KRTDAPP60985 99 aa11.86□□□□□ -0.51
NUP88-204ENST00000572290 S100A12P80511 92 aa11.86□□□□□ -0.51
NUP88-204ENST00000572290 LINC00337Q8N6G1 96 aa11.86□□□□□ -0.51
NUP88-204ENST00000572290 KRTAP13-2Q52LG2 175 aa11.85□□□□□ -0.51
NUP88-204ENST00000572290 SPANXB1Q9NS25 103 aaPredicted RBP11.85□□□□□ -0.51
NUP88-204ENST00000572290 ETDCA0A1B0GVM5 59 aa11.84□□□□□ -0.51
NUP88-204ENST00000572290 NDUFC2O95298 119 aa11.84□□□□□ -0.51
NUP88-204ENST00000572290 DDTP30046 118 aa11.84□□□□□ -0.51
NUP88-204ENST00000572290 ADAMTSL4-AS1Q5T5F5 129 aa11.84□□□□□ -0.51
NUP88-204ENST00000572290 NPC2P61916 151 aa11.83□□□□□ -0.52
NUP88-204ENST00000572290 KRTAP4-16G5E9R7 235 aaPredicted RBP11.82□□□□□ -0.52
NUP88-204ENST00000572290 SOSTDC1Q6X4U4 206 aa11.82□□□□□ -0.52
NUP88-204ENST00000572290 C20orf202A1L168 122 aa11.81□□□□□ -0.52
NUP88-204ENST00000572290 TSPAN13O95857 204 aa11.81□□□□□ -0.52
NUP88-204ENST00000572290 S100A1P23297 94 aa11.81□□□□□ -0.52
NUP88-204ENST00000572290 ZNF815PA8K554 130 aa11.8□□□□□ -0.52
NUP88-204ENST00000572290 EIF4EBP3O60516 100 aaPredicted RBP11.8□□□□□ -0.52
NUP88-204ENST00000572290 S100A7L2Q5SY68 101 aa11.8□□□□□ -0.52
NUP88-204ENST00000572290 SPRR4Q96PI1 79 aa11.8□□□□□ -0.52
NUP88-204ENST00000572290 ZNF706Q9Y5V0 76 aaPredicted RBP11.8□□□□□ -0.52
NUP88-204ENST00000572290 TIMM17BO60830 172 aa11.79□□□□□ -0.52
NUP88-204ENST00000572290 LITAFQ99732 161 aa11.79□□□□□ -0.52
NUP88-204ENST00000572290 SMCR5Q8TEV8 140 aa11.78□□□□□ -0.52
NUP88-204ENST00000572290 TTTY13Q9BZ97 58 aa11.78□□□□□ -0.52
NUP88-204ENST00000572290 B5MCH6 92 aa11.77□□□□□ -0.53
NUP88-204ENST00000572290 IGLV6-57P01721 117 aa11.77□□□□□ -0.53
NUP88-204ENST00000572290 PRR4Q16378 134 aa11.77□□□□□ -0.53
NUP88-204ENST00000572290 LPAP08519 4548 aa11.77□□□□□ -0.53
NUP88-204ENST00000572290 LINC00304Q8N9R0 145 aa11.76□□□□□ -0.53
NUP88-204ENST00000572290 LINC00308Q8TCZ7 52 aa11.76□□□□□ -0.53
NUP88-204ENST00000572290 TRAV23DV6A0A075B6W5 121 aa11.74□□□□□ -0.53
NUP88-204ENST00000572290 C3orf22Q8N5N4 141 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms