RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 C9orf66Q5T8R8 295 aa7.34□□□□□ -1.23
CCDC40-207ENST00000572253 WFDC9Q8NEX5 89 aa7.34□□□□□ -1.23
CCDC40-207ENST00000572253 USP24Q9UPU5 2620 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 FAM19A1Q7Z5A9 133 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 FAM19A5Q7Z5A7 132 aaPredicted RBP7.33□□□□□ -1.24
CCDC40-207ENST00000572253 Q8N3U1 123 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 NF1P21359 2839 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 UBR5O95071 2799 aaPredicted RBP7.33□□□□□ -1.24
CCDC40-207ENST00000572253 LELP1Q5T871 98 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 LYPD5Q6UWN5 251 aa7.33□□□□□ -1.24
CCDC40-207ENST00000572253 MRPL55Q7Z7F7 128 aaKnown RBP7.33□□□□□ -1.24
CCDC40-207ENST00000572253 LOC110117498A0A087WWA1 95 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 CYSRT1A8MQ03 144 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 PRB2P02812 416 aaPredicted RBP7.32□□□□□ -1.24
CCDC40-207ENST00000572253 Q6ZQT0 140 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 A0A0J9YWU9 116 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 IGHV4-30-4P0DP06 118 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 C1orf195Q5TG92 126 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 C6orf223Q8N319 242 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 DIRC1Q969H9 104 aa7.32□□□□□ -1.24
CCDC40-207ENST00000572253 C10orf25Q5T742 122 aa7.31□□□□□ -1.24
CCDC40-207ENST00000572253 KLK12Q9UKR0 248 aa7.31□□□□□ -1.24
CCDC40-207ENST00000572253 HECTD1Q9ULT8 2610 aa7.31□□□□□ -1.24
CCDC40-207ENST00000572253 Q6ZQY7 126 aa7.31□□□□□ -1.24
CCDC40-207ENST00000572253 SPART-AS1P0CW21 52 aa7.31□□□□□ -1.24
CCDC40-207ENST00000572253 APCP25054 2843 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 CYSTM1Q9H1C7 97 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 NDUFC2-KCTD14E9PQ53 114 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 IGLV6-57P01721 117 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 MPLKIPQ8TAP9 179 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 DPH3Q96FX2 82 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 MIFP14174 115 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 Q8NDZ9 215 aa7.3□□□□□ -1.24
CCDC40-207ENST00000572253 BCE1O60756 84 aa7.29□□□□□ -1.24
CCDC40-207ENST00000572253 AKAP9Q99996 3911 aa7.28□□□□□ -1.24
CCDC40-207ENST00000572253 GVQW2A0A096LPI5 108 aaPredicted RBP7.28□□□□□ -1.24
CCDC40-207ENST00000572253 J3QKU1 62 aa7.28□□□□□ -1.24
CCDC40-207ENST00000572253 COX7BP24311 80 aa7.28□□□□□ -1.24
CCDC40-207ENST00000572253 KRTAP10-3P60369 221 aa7.28□□□□□ -1.24
CCDC40-207ENST00000572253 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.28□□□□□ -1.24
CCDC40-207ENST00000572253 TRAV7A0A075B6U4 112 aa7.27□□□□□ -1.25
CCDC40-207ENST00000572253 LINC01547P58512 204 aaPredicted RBP7.27□□□□□ -1.25
CCDC40-207ENST00000572253 Q6ZVQ6 151 aa7.27□□□□□ -1.25
CCDC40-207ENST00000572253 RETNQ9HD89 108 aa7.27□□□□□ -1.25
CCDC40-207ENST00000572253 PRR34Q9NV39 138 aa7.27□□□□□ -1.25
CCDC40-207ENST00000572253 CELA1Q9UNI1 258 aa7.27□□□□□ -1.25
CCDC40-207ENST00000572253 GCN1Q92616 2671 aaKnown RBP7.26□□□□□ -1.25
CCDC40-207ENST00000572253 XAGE1AQ9HD64 81 aa7.26□□□□□ -1.25
CCDC40-207ENST00000572253 ZNF73O43830 326 aaPredicted RBP7.26□□□□□ -1.25
CCDC40-207ENST00000572253 Q8NAQ8 132 aa7.25□□□□□ -1.25
CCDC40-207ENST00000572253 SEC61GP60059 68 aa7.25□□□□□ -1.25
CCDC40-207ENST00000572253 CXCL6P80162 114 aa7.25□□□□□ -1.25
CCDC40-207ENST00000572253 C6orf48Q9UBA6 75 aa7.25□□□□□ -1.25
CCDC40-207ENST00000572253 CAMK2N2Q96S95 79 aa7.25□□□□□ -1.25
CCDC40-207ENST00000572253 NIPBLQ6KC79 2804 aaeCLIP7.24□□□□□ -1.25
CCDC40-207ENST00000572253 FAM236DA0A1B0GTK5 79 aa7.24□□□□□ -1.25
CCDC40-207ENST00000572253 FAM236CP0DP71 79 aa7.24□□□□□ -1.25
CCDC40-207ENST00000572253 SPTSSBQ8NFR3 76 aa7.24□□□□□ -1.25
CCDC40-207ENST00000572253 TRBV7-6A0A0J9YX20 115 aa7.23□□□□□ -1.25
CCDC40-207ENST00000572253 SPATA3Q8NHX4 192 aa7.23□□□□□ -1.25
CCDC40-207ENST00000572253 M0R2N4 97 aa7.22□□□□□ -1.25
CCDC40-207ENST00000572253 M0R378 163 aa7.22□□□□□ -1.25
CCDC40-207ENST00000572253 NBEAL2Q6ZNJ1 2754 aa7.22□□□□□ -1.25
CCDC40-207ENST00000572253 ELOF1P60002 83 aaKnown RBP7.22□□□□□ -1.25
CCDC40-207ENST00000572253 EGFEM1PQ0D2K5 195 aa7.22□□□□□ -1.25
CCDC40-207ENST00000572253 HIGD2BQ4VC39 106 aa7.21□□□□□ -1.25
CCDC40-207ENST00000572253 TRBV7-4A0A0J9YYF1 115 aa7.2□□□□□ -1.26
CCDC40-207ENST00000572253 SMR3AQ99954 134 aa7.2□□□□□ -1.26
CCDC40-207ENST00000572253 VPREB1P12018 145 aa7.19□□□□□ -1.26
CCDC40-207ENST00000572253 TRAV10A0A0B4J240 114 aa7.18□□□□□ -1.26
CCDC40-207ENST00000572253 SCXQ7RTU7 201 aa7.18□□□□□ -1.26
CCDC40-207ENST00000572253 SERP1Q9Y6X1 66 aa7.17□□□□□ -1.26
CCDC40-207ENST00000572253 KLKP1Q107X0 134 aa7.17□□□□□ -1.26
CCDC40-207ENST00000572253 OXTP01178 125 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 KPRPQ5T749 579 aaPredicted RBP7.16□□□□□ -1.26
CCDC40-207ENST00000572253 Q6ZRU5 148 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 WFDC10BQ8IUB3 73 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 ZNF469Q96JG9 3925 aaPredicted RBP7.16□□□□□ -1.26
CCDC40-207ENST00000572253 H7BZZ5 65 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 NDUFC1O43677 76 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 SNURFQ9Y675 71 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 CUBNO60494 3623 aa7.16□□□□□ -1.26
CCDC40-207ENST00000572253 LINC00528Q8N1L1 170 aa7.15□□□□□ -1.26
CCDC40-207ENST00000572253 H3BNG1 76 aa7.15□□□□□ -1.26
CCDC40-207ENST00000572253 ATRQ13535 2644 aa7.15□□□□□ -1.27
CCDC40-207ENST00000572253 NREPQ16612 68 aa7.15□□□□□ -1.27
CCDC40-207ENST00000572253 NKAPP1Q8N9T2 125 aa7.15□□□□□ -1.27
CCDC40-207ENST00000572253 F8WDY8 70 aa7.14□□□□□ -1.27
CCDC40-207ENST00000572253 ANK3Q12955 4377 aaKnown RBP7.14□□□□□ -1.27
CCDC40-207ENST00000572253 RMI2Q96E14 147 aa7.14□□□□□ -1.27
CCDC40-207ENST00000572253 NBPF19A0A087WUL8 3843 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 F8WEM9 126 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 C4orf26Q17RF5 130 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 IGKV2D-24A0A075B6R9 120 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 PRO0628Q9UI54 55 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 F8P00451 2351 aa7.13□□□□□ -1.27
CCDC40-207ENST00000572253 BPY2O14599 106 aa7.12□□□□□ -1.27
CCDC40-207ENST00000572253 C15orf56Q8N910 161 aa7.12□□□□□ -1.27
CCDC40-207ENST00000572253 INAFM1C9JVW0 142 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms