RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TMEM256-PLSCR3K7ERE1 68 aa15.34■□□□□ 0.05
VPS53-211ENST00000571805 S100A7L2Q5SY68 101 aa15.34■□□□□ 0.05
VPS53-211ENST00000571805 CCKP06307 115 aa15.33■□□□□ 0.04
VPS53-211ENST00000571805 GVQW2A0A096LPI5 108 aaPredicted RBP15.32■□□□□ 0.04
VPS53-211ENST00000571805 JMJD7-PLA2G4BH0Y9G9 81 aa15.32■□□□□ 0.04
VPS53-211ENST00000571805 LINC00575Q6W349 94 aa15.31■□□□□ 0.04
VPS53-211ENST00000571805 Q6JHZ5 121 aa15.31■□□□□ 0.04
VPS53-211ENST00000571805 IGLV6-57P01721 117 aa15.29■□□□□ 0.04
VPS53-211ENST00000571805 C6orf48Q9UBA6 75 aa15.29■□□□□ 0.04
VPS53-211ENST00000571805 HIST1H4AP62805 103 aaKnown RBP15.28■□□□□ 0.04
VPS53-211ENST00000571805 RPL18AQ02543 176 aaKnown RBP15.27■□□□□ 0.04
VPS53-211ENST00000571805 IGKV3D-7A0A0C4DH55 119 aa15.27■□□□□ 0.03
VPS53-211ENST00000571805 RETNQ9HD89 108 aa15.26■□□□□ 0.03
VPS53-211ENST00000571805 WFDC10BQ8IUB3 73 aa15.25■□□□□ 0.03
VPS53-211ENST00000571805 H3BNG1 76 aa15.25■□□□□ 0.03
VPS53-211ENST00000571805 KPRPQ5T749 579 aaPredicted RBP15.24■□□□□ 0.03
VPS53-211ENST00000571805 hADV29S1A0JD25 119 aa15.24■□□□□ 0.03
VPS53-211ENST00000571805 OXLD1Q5BKU9 147 aa15.24■□□□□ 0.03
VPS53-211ENST00000571805 KRTAP10-11P60412 298 aa15.23■□□□□ 0.03
VPS53-211ENST00000571805 KRTAP26-1Q6PEX3 210 aa15.22■□□□□ 0.03
VPS53-211ENST00000571805 C3orf22Q8N5N4 141 aa15.21■□□□□ 0.03
VPS53-211ENST00000571805 XAGE1AQ9HD64 81 aa15.21■□□□□ 0.03
VPS53-211ENST00000571805 TRBV10-3A0A0K0K1G6 114 aa15.19■□□□□ 0.02
VPS53-211ENST00000571805 Q6ZTC4 211 aa15.19■□□□□ 0.02
VPS53-211ENST00000571805 UQCRQO14949 82 aa15.19■□□□□ 0.02
VPS53-211ENST00000571805 HIGD2BQ4VC39 106 aa15.18■□□□□ 0.02
VPS53-211ENST00000571805 C3orf56Q8N813 242 aa15.17■□□□□ 0.02
VPS53-211ENST00000571805 C2orf48Q96LS8 159 aa15.17■□□□□ 0.02
VPS53-211ENST00000571805 PKD1L1Q8TDX9 2849 aa15.17■□□□□ 0.02
VPS53-211ENST00000571805 ZNF561-AS1K7EIQ3 104 aa15.16■□□□□ 0.02
VPS53-211ENST00000571805 ATOX1O00244 68 aa15.16■□□□□ 0.02
VPS53-211ENST00000571805 TRAV23DV6A0A075B6W5 121 aa15.16■□□□□ 0.02
VPS53-211ENST00000571805 A0A087WVE0 104 aa15.16■□□□□ 0.02
VPS53-211ENST00000571805 CAMK2N2Q96S95 79 aa15.15■□□□□ 0.02
VPS53-211ENST00000571805 ESRGQ1W209 222 aa15.14■□□□□ 0.01
VPS53-211ENST00000571805 COX7CP15954 63 aa15.14■□□□□ 0.01
VPS53-211ENST00000571805 RBM3P98179 157 aaKnown RBP15.14■□□□□ 0.01
VPS53-211ENST00000571805 ANK2Q01484 3957 aa15.14■□□□□ 0.01
VPS53-211ENST00000571805 Q6ZQT0 140 aa15.13■□□□□ 0.01
VPS53-211ENST00000571805 C15orf56Q8N910 161 aa15.13■□□□□ 0.01
VPS53-211ENST00000571805 C9orf153Q5TBE3 101 aa15.13■□□□□ 0.01
VPS53-211ENST00000571805 Q6ZQY7 126 aa15.13■□□□□ 0.01
VPS53-211ENST00000571805 DIRC1Q969H9 104 aa15.12■□□□□ 0.01
VPS53-211ENST00000571805 VPREB1P12018 145 aa15.12■□□□□ 0.01
VPS53-211ENST00000571805 EGFEM1PQ0D2K5 195 aa15.12■□□□□ 0.01
VPS53-211ENST00000571805 Q6ZRU5 148 aa15.12■□□□□ 0.01
VPS53-211ENST00000571805 LOC110117498A0A087WWA1 95 aa15.11■□□□□ 0.01
VPS53-211ENST00000571805 ZNF73O43830 326 aaPredicted RBP15.1■□□□□ 0.01
VPS53-211ENST00000571805 LAMTOR3Q9UHA4 124 aa15.1■□□□□ 0.01
VPS53-211ENST00000571805 TENM3Q9P273 2699 aa15.09■□□□□ 0.01
VPS53-211ENST00000571805 ATP5EP2Q5VTU8 51 aa15.09■□□□□ 0.01
VPS53-211ENST00000571805 CMYA5Q8N3K9 4069 aa15.08■□□□□ 0
VPS53-211ENST00000571805 H3BQ85 93 aa15.07■□□□□ 0
VPS53-211ENST00000571805 COX7BP24311 80 aa15.06■□□□□ 0
VPS53-211ENST00000571805 ELOF1P60002 83 aaKnown RBP15.06■□□□□ 0
VPS53-211ENST00000571805 USP17L23D6RBM5 183 aa15.06■□□□□ 0
VPS53-211ENST00000571805 UBL5Q9BZL1 73 aa15.06■□□□□ 0
VPS53-211ENST00000571805 TRBV7-6A0A0J9YX20 115 aa15.05■□□□□ 0
VPS53-211ENST00000571805 NDUFC2-KCTD14E9PQ53 114 aa15.05■□□□□ 0
VPS53-211ENST00000571805 M0R2N4 97 aa15.05■□□□□ 0
VPS53-211ENST00000571805 M0R378 163 aa15.04■□□□□ -0
VPS53-211ENST00000571805 LINC01556Q5JQF7 62 aa15.04■□□□□ -0
VPS53-211ENST00000571805 CRYGAP11844 174 aa15.04■□□□□ -0
VPS53-211ENST00000571805 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.04■□□□□ -0
VPS53-211ENST00000571805 C1orf43Q9BWL3 253 aa15.04■□□□□ -0
VPS53-211ENST00000571805 DEFB131BA0A096LNP1 70 aa15.03■□□□□ -0
VPS53-211ENST00000571805 DSCR8Q96T75 97 aa15.02□□□□□ -0.01
VPS53-211ENST00000571805 KRTAP24-1Q3LI83 254 aa15.01□□□□□ -0.01
VPS53-211ENST00000571805 FAM19A1Q7Z5A9 133 aa15.01□□□□□ -0.01
VPS53-211ENST00000571805 SERP2Q8N6R1 65 aa15.01□□□□□ -0.01
VPS53-211ENST00000571805 Q6ZRP5 223 aa15□□□□□ -0.01
VPS53-211ENST00000571805 IGKV2D-24A0A075B6R9 120 aa14.99□□□□□ -0.01
VPS53-211ENST00000571805 C11orf45Q8TAV5 145 aa14.99□□□□□ -0.01
VPS53-211ENST00000571805 F8P00451 2351 aa14.99□□□□□ -0.01
VPS53-211ENST00000571805 PDE6GP18545 87 aa14.99□□□□□ -0.01
VPS53-211ENST00000571805 SMIM20Q8N5G0 67 aa14.99□□□□□ -0.01
VPS53-211ENST00000571805 DNAH3Q8TD57 4116 aa14.98□□□□□ -0.01
VPS53-211ENST00000571805 F8WDY8 70 aa14.97□□□□□ -0.01
VPS53-211ENST00000571805 LINC00528Q8N1L1 170 aa14.97□□□□□ -0.01
VPS53-211ENST00000571805 FBN1P35555 2871 aaKnown RBP14.96□□□□□ -0.01
VPS53-211ENST00000571805 STAB1Q9NY15 2570 aa14.96□□□□□ -0.02
VPS53-211ENST00000571805 TRBV7-4A0A0J9YYF1 115 aa14.96□□□□□ -0.02
VPS53-211ENST00000571805 UPK3BQ9BT76 320 aa14.95□□□□□ -0.02
VPS53-211ENST00000571805 SYCNQ0VAF6 134 aa14.95□□□□□ -0.02
VPS53-211ENST00000571805 GHRHP01286 108 aa14.94□□□□□ -0.02
VPS53-211ENST00000571805 Q6ZVQ6 151 aa14.93□□□□□ -0.02
VPS53-211ENST00000571805 CYSTM1Q9H1C7 97 aa14.93□□□□□ -0.02
VPS53-211ENST00000571805 DNAH10OSP0CZ25 163 aa14.93□□□□□ -0.02
VPS53-211ENST00000571805 LINC01547P58512 204 aaPredicted RBP14.92□□□□□ -0.02
VPS53-211ENST00000571805 HAMPP81172 84 aa14.87□□□□□ -0.03
VPS53-211ENST00000571805 FLNBO75369 2602 aaKnown RBP14.87□□□□□ -0.03
VPS53-211ENST00000571805 SERTAD4-AS1Q5TG53 156 aa14.87□□□□□ -0.03
VPS53-211ENST00000571805 KCNQ1DNQ9H478 68 aa14.86□□□□□ -0.03
VPS53-211ENST00000571805 MAST4O15021 2626 aa14.85□□□□□ -0.03
VPS53-211ENST00000571805 CXCL6P80162 114 aa14.84□□□□□ -0.03
VPS53-211ENST00000571805 C7orf33Q8WU49 177 aa14.83□□□□□ -0.03
VPS53-211ENST00000571805 LINC00588Q9Y4M8 146 aa14.83□□□□□ -0.03
VPS53-211ENST00000571805 TLX1NBP0CAT3 122 aa14.83□□□□□ -0.04
VPS53-211ENST00000571805 NKAPP1Q8N9T2 125 aa14.83□□□□□ -0.04
VPS53-211ENST00000571805 TRAV10A0A0B4J240 114 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms