RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 ZC2HC1BQ5TFG8 222 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 COX6B2Q6YFQ2 88 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 OSTCQ9NRP0 149 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 D6R8Y8 96 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 TMEM250H0YL14 139 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 RAB5BP61020 215 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 SEC11AP67812 179 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 FAM19A3Q7Z5A8 133 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 LINC01551Q86U37 167 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 AMELXQ99217 191 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 VCX2Q9H322 139 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 GEMIN7Q9H840 131 aaKnown RBP3.15□□□□□ -1.91
VPS53-208ENST00000570650 CDKN2A-AS1Q9UH64 79 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 NAT8BQ9UHF3 227 aa3.15□□□□□ -1.91
VPS53-208ENST00000570650 FLGP20930 4061 aaPredicted RBP3.15□□□□□ -1.91
VPS53-208ENST00000570650 VPREB1P12018 145 aa3.14□□□□□ -1.91
VPS53-208ENST00000570650 C2orf66Q6UXQ4 117 aa3.14□□□□□ -1.91
VPS53-208ENST00000570650 CYSLTR1Q9Y271 337 aa3.14□□□□□ -1.91
VPS53-208ENST00000570650 V9GYV3 84 aa3.14□□□□□ -1.91
VPS53-208ENST00000570650 A0A1B0GW15 77 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 SMIM1B2RUZ4 78 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 KRTAP4-16G5E9R7 235 aaPredicted RBP3.13□□□□□ -1.91
VPS53-208ENST00000570650 PPBPP02775 128 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 CEBPGP53567 150 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 RPL24P83731 157 aaKnown RBP3.13□□□□□ -1.91
VPS53-208ENST00000570650 MOBPQ13875 183 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 PDZD11Q5EBL8 140 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 SSBP3-AS1Q7Z2R9 100 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 COX7B2Q8TF08 81 aa3.13□□□□□ -1.91
VPS53-208ENST00000570650 F8W036 122 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 S100A8P05109 93 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 FAM74A3Q4VXF1 159 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 LINC00483Q53H64 154 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
VPS53-208ENST00000570650 AKAP14Q86UN6 197 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 ORMDL3Q8N138 153 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 SMIM7Q9BQ49 75 aa3.12□□□□□ -1.91
VPS53-208ENST00000570650 IGLV9-49A0A0B4J1Y8 123 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 SMIM27A0A1W2PRY6 76 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 C9orf92A6NGG3 77 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 IGIPA6NJ69 53 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 ATP5LO75964 103 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 PFN2P35080 140 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 SMCR5Q8TEV8 140 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 PRELID3AQ96N28 172 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 SND1-IT1Q9HBX3 110 aa3.11□□□□□ -1.91
VPS53-208ENST00000570650 LOC389332A0A1B0GUA5 103 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 RAB14P61106 215 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 GAGE2AQ6NT46 116 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 MRPL54Q6P161 138 aaKnown RBP3.1□□□□□ -1.91
VPS53-208ENST00000570650 TMEM136Q6ZRR5 245 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 MAP1LC3AQ9H492 121 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 FCGBPQ9Y6R7 5405 aaPredicted RBP3.1□□□□□ -1.91
VPS53-208ENST00000570650 SSPOA2VEC9 5147 aa3.1□□□□□ -1.91
VPS53-208ENST00000570650 IGLV5-45A0A087WSX0 123 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 TINCRA0A1B0GVN0 87 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 A0A1B0GXF2 115 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 SPINK8P0C7L1 97 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 ORMDL2Q53FV1 153 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 Q75L30 129 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 Q8N8P6 123 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 Q8NDZ9 215 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 TIMM17AQ99595 171 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 LAMTOR2Q9Y2Q5 125 aa3.09□□□□□ -1.91
VPS53-208ENST00000570650 K7EMI3 77 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 IGLV6-57P01721 117 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 SPRR1AP35321 89 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 COX17Q14061 63 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 ERG28Q9UKR5 140 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 USH2AO75445 5202 aa3.08□□□□□ -1.92
VPS53-208ENST00000570650 MACF1Q9UPN3 7388 aaKnown RBP3.07□□□□□ -1.92
VPS53-208ENST00000570650 ETDCA0A1B0GVM5 59 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 G0S2P27469 103 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 RPL37P61927 97 aaKnown RBP3.07□□□□□ -1.92
VPS53-208ENST00000570650 RPL23P62829 140 aaKnown RBP3.07□□□□□ -1.92
VPS53-208ENST00000570650 C9orf153Q5TBE3 101 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 SLC51BQ86UW2 128 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 LITAFQ99732 161 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 LIMD2Q9BT23 127 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 BATF3Q9NR55 127 aa3.07□□□□□ -1.92
VPS53-208ENST00000570650 H3BRM9 83 aa3.06□□□□□ -1.92
VPS53-208ENST00000570650 SRP19P09132 144 aaKnown RBP3.06□□□□□ -1.92
VPS53-208ENST00000570650 ADIRFQ15847 76 aa3.06□□□□□ -1.92
VPS53-208ENST00000570650 TOMM6Q96B49 74 aa3.06□□□□□ -1.92
VPS53-208ENST00000570650 SYNE2Q8WXH0 6885 aaKnown RBP3.06□□□□□ -1.92
VPS53-208ENST00000570650 ERC2-IT1O76042 136 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 RGS21Q2M5E4 152 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 Q6Q795 121 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 ERASQ7Z444 233 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 ATP5L2Q7Z4Y8 100 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 ZNF625Q96I27 306 aaPredicted RBP3.05□□□□□ -1.92
VPS53-208ENST00000570650 SCGB3A1Q96QR1 104 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 KCNQ1DNQ9H478 68 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 NXT2Q9NPJ8 142 aaKnown RBP3.05□□□□□ -1.92
VPS53-208ENST00000570650 LINC00846Q9NV44 126 aa3.05□□□□□ -1.92
VPS53-208ENST00000570650 TRAV9-1A0A075B6T8 112 aa3.04□□□□□ -1.92
VPS53-208ENST00000570650 KRTAP10-5P60370 271 aa3.04□□□□□ -1.92
VPS53-208ENST00000570650 CST9LQ9H4G1 147 aa3.04□□□□□ -1.92
VPS53-208ENST00000570650 NAT8Q9UHE5 227 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms