RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 MED13LQ71F56 2210 aa2.83□□□□□ -1.96
UBR1-208ENST00000569066 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.82□□□□□ -1.96
UBR1-208ENST00000569066 IGKV2-40A0A087WW87 121 aaPredicted RBP2.82□□□□□ -1.96
UBR1-208ENST00000569066 LCE6AA0A183 80 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 JMJD7-PLA2G4BH0Y9G9 81 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 IGKV2D-40P01614 121 aaPredicted RBP2.82□□□□□ -1.96
UBR1-208ENST00000569066 IGHV1-69P01742 117 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 SPINK7P58062 85 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 SPEGQ15772 3267 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 DOPEY2Q9Y3R5 2298 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 NAV3Q8IVL0 2385 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 TRBV6-5A0A0K0K1A5 114 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 CRPP02741 224 aa2.82□□□□□ -1.96
UBR1-208ENST00000569066 ABCA1O95477 2261 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 DNAH12Q6ZR08 3092 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 ASB16-AS1Q495Z4 193 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 Q6ZQT0 140 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 TTTY12Q9BZ98 90 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 DNAH14Q0VDD8 3507 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 AHCTF1Q8WYP5 2266 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 CCL3P10147 92 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 SMIM11BQ8TCY0 68 aa2.81□□□□□ -1.96
UBR1-208ENST00000569066 UNC80Q8N2C7 3258 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 BRWD1Q9NSI6 2320 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 IGLV10-54A0A075B6I4 117 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 IGHV1-18A0A0C4DH31 117 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 H0YGX0 51 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 IGKV4-1P06312 121 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 SAA2P0DJI9 122 aaPredicted RBP2.8□□□□□ -1.96
UBR1-208ENST00000569066 POLR2KP53803 58 aaKnown RBP2.8□□□□□ -1.96
UBR1-208ENST00000569066 WT1-ASQ06250 92 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 FAM27BQ5VT28 67 aa2.8□□□□□ -1.96
UBR1-208ENST00000569066 NDUFA1O15239 70 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 MGPP08493 103 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 PLAC8Q9NZF1 115 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 KLK9Q9UKQ9 250 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 CHD7Q9P2D1 2997 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 CXorf51AA0A1B0GTR3 108 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 H0YGG7 62 aa2.79□□□□□ -1.96
UBR1-208ENST00000569066 TNRC18O15417 2968 aaPredicted RBP2.78□□□□□ -1.96
UBR1-208ENST00000569066 OBSCNQ5VST9 7968 aa2.78□□□□□ -1.96
UBR1-208ENST00000569066 LOC110117498A0A087WWA1 95 aa2.78□□□□□ -1.96
UBR1-208ENST00000569066 RPL27AP46776 148 aaKnown RBP2.78□□□□□ -1.96
UBR1-208ENST00000569066 ERHP84090 104 aaKnown RBP2.78□□□□□ -1.96
UBR1-208ENST00000569066 LINC00208Q96KT6 92 aa2.78□□□□□ -1.96
UBR1-208ENST00000569066 WDFY4Q6ZS81 3184 aa2.78□□□□□ -1.96
UBR1-208ENST00000569066 CR1P17927 2039 aa2.78□□□□□ -1.96
UBR1-208ENST00000569066 IGHV3-73A0A0B4J1V6 119 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 ELOF1P60002 83 aaKnown RBP2.77□□□□□ -1.97
UBR1-208ENST00000569066 C10orf55Q5SWW7 151 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 Q9BRP9 147 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 EP400Q96L91 3159 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 IGKV3D-11A0A0A0MRZ8 115 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 H3BRN7 92 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 MIR22HGQ0VDD5 57 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 CNEP1R1Q8N9A8 125 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 Q8NDZ9 215 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 FRYLO94915 3013 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 LAMA3Q16787 3333 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 LAMA2P24043 3122 aaKnown RBP2.77□□□□□ -1.97
UBR1-208ENST00000569066 CFAP47Q6ZTR5 3102 aa2.77□□□□□ -1.97
UBR1-208ENST00000569066 PPP1R17O96001 155 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 PDE6HQ13956 83 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 COX14Q96I36 57 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 LINC01558Q9Y6Z2 57 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 PRUNE2Q8WUY3 3088 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 PDE6GP18545 87 aa2.76□□□□□ -1.97
UBR1-208ENST00000569066 LINC00959A0A1B0GUT2 108 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 NDUFA4O00483 81 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 CNBPP62633 177 aaKnown RBP2.75□□□□□ -1.97
UBR1-208ENST00000569066 MINOS1-NBL1R4GNA1 71 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 A0A096LNT2 108 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 FAM74A4Q5TZK3 123 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 CDKN2A-AS1Q9UH64 79 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 NOTCH2Q04721 2471 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 ICE1Q9Y2F5 2266 aa2.75□□□□□ -1.97
UBR1-208ENST00000569066 FRYQ5TBA9 3013 aa2.74□□□□□ -1.97
UBR1-208ENST00000569066 IGHV3-15A0A0B4J1V0 119 aa2.74□□□□□ -1.97
UBR1-208ENST00000569066 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
UBR1-208ENST00000569066 WDR87Q6ZQQ6 2873 aa2.73□□□□□ -1.97
UBR1-208ENST00000569066 SPAG11AQ6PDA7 123 aa2.73□□□□□ -1.97
UBR1-208ENST00000569066 LAMA1P25391 3075 aa2.73□□□□□ -1.97
UBR1-208ENST00000569066 BRCA2P51587 3418 aa2.73□□□□□ -1.97
UBR1-208ENST00000569066 WDFY3Q8IZQ1 3526 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 TRGV2A0A075B6R0 118 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 TRBV6-4A0A1B0GX49 114 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 NDUFB1O75438 58 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 KRTAP5-9P26371 169 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 SPAG11BQ08648 103 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 DEFB110Q30KQ9 67 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 WFDC10AQ9H1F0 79 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 FREM2Q5SZK8 3169 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 CDH23Q9H251 3354 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 APELAP0DMC3 54 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.72□□□□□ -1.97
UBR1-208ENST00000569066 COA5Q86WW8 74 aa2.72□□□□□ -1.97
UBR1-208ENST00000569066 REV3LO60673 3130 aa2.71□□□□□ -1.97
UBR1-208ENST00000569066 HTTP42858 3142 aa2.71□□□□□ -1.97
UBR1-208ENST00000569066 COX6A2Q02221 97 aa2.71□□□□□ -1.98
UBR1-208ENST00000569066 TMEM167AQ8TBQ9 72 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms