RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IGHV3-23P01764 117 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 LUZP6Q538Z0 58 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 PATE1Q8WXA2 126 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 RNF5Q99942 180 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 C8orf17Q9NRJ1 99 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 ZNRD1Q9P1U0 126 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 CCL26Q9Y258 94 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 SRCAPQ6ZRS2 3230 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 PLCE1Q9P212 2302 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 IGKV2D-24A0A075B6R9 120 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 IGHV3-74A0A0B4J1X5 117 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 K7ERS5 55 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 ZNF861PO60384 105 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 IGHV3-11P01762 117 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 APELAP0DMC3 54 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 C1orf137Q5JT78 98 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 C20orf166-AS1Q96NR2 134 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 SPRR4Q96PI1 79 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 Q9Y3F1 56 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 FAM215AQ9Y5M1 114 aa2.01□□□□□ -2.09
VPS35-208ENST00000568612 KMT2BQ9UMN6 2715 aaPredicted RBP2□□□□□ -2.09
VPS35-208ENST00000568612 IGLV10-54A0A075B6I4 117 aa2□□□□□ -2.09
VPS35-208ENST00000568612 IGLV1-50A0A075B6I6 118 aa2□□□□□ -2.09
VPS35-208ENST00000568612 UQCR11O14957 56 aa2□□□□□ -2.09
VPS35-208ENST00000568612 IGHV1-46P01743 117 aa2□□□□□ -2.09
VPS35-208ENST00000568612 KLK9Q2XQG4 91 aa2□□□□□ -2.09
VPS35-208ENST00000568612 DEFB113Q30KQ7 82 aa2□□□□□ -2.09
VPS35-208ENST00000568612 ALMS1Q8TCU4 4167 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 K7EQZ3 153 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 DNAH10OSP0CZ25 163 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 EGFEM1PQ0D2K5 195 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 CASC10Q5T4H9 136 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 LYPD2Q6UXB3 125 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 DMAC1Q96GE9 116 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 DPM3Q9P2X0 92 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 KLK12Q9UKR0 248 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 ZNF318Q5VUA4 2279 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 MED13LQ71F56 2210 aa1.99□□□□□ -2.09
VPS35-208ENST00000568612 PRRC2BQ5JSZ5 2229 aaKnown RBP1.98□□□□□ -2.09
VPS35-208ENST00000568612 ASCC3Q8N3C0 2202 aaKnown RBP1.98□□□□□ -2.09
VPS35-208ENST00000568612 PCNTO95613 3336 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 GOLGB1Q14789 3259 aaKnown RBP1.98□□□□□ -2.09
VPS35-208ENST00000568612 DEFB131BA0A096LNP1 70 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 NUPR2A6NF83 97 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 ODF3BA8MYP8 253 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 IGLV6-57P01721 117 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 CCL3L1P16619 93 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 KRTAP26-1Q6PEX3 210 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 Q8IZM0 81 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 DEC1Q9P2X7 70 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 KAAG1Q9UBP8 84 aa1.98□□□□□ -2.09
VPS35-208ENST00000568612 URB1O60287 2271 aaKnown RBP1.97□□□□□ -2.09
VPS35-208ENST00000568612 IGKV3-7A0A075B6H7 116 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 RPL37AP8A6NKH3 93 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 A8MUU9 505 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 HRES1P13985 223 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 COX17Q14061 63 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 TYMSOSQ8TAI1 123 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 CAMK2N2Q96S95 79 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 TOMM7Q9P0U1 55 aa1.97□□□□□ -2.09
VPS35-208ENST00000568612 CENPFP49454 3210 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 IGLV5-48A0A075B6I7 105 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 IGKV3OR2-268A0A0C4DH90 116 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 LCE3EQ5T5B0 92 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 Q8N9W7 124 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 C7orf33Q8WU49 177 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 PRO3102Q9H379 93 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 DOPEY2Q9Y3R5 2298 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 COL6A3P12111 3177 aa1.96□□□□□ -2.1
VPS35-208ENST00000568612 KNL1Q8NG31 2342 aa1.95□□□□□ -2.1
VPS35-208ENST00000568612 A6NDX4 124 aa1.95□□□□□ -2.1
VPS35-208ENST00000568612 LINC00472Q9H8W2 130 aa1.95□□□□□ -2.1
VPS35-208ENST00000568612 SORL1Q92673 2214 aa1.95□□□□□ -2.1
VPS35-208ENST00000568612 SDK1Q7Z5N4 2213 aa1.94□□□□□ -2.1
VPS35-208ENST00000568612 A0A1B0GU69 56 aa1.94□□□□□ -2.1
VPS35-208ENST00000568612 TLX1NBP0CAT3 122 aa1.94□□□□□ -2.1
VPS35-208ENST00000568612 Q5W150 140 aa1.94□□□□□ -2.1
VPS35-208ENST00000568612 TMEM105Q8N8V8 129 aa1.94□□□□□ -2.1
VPS35-208ENST00000568612 A0A087WTM6 91 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 TRGV1A0A0A0MS02 117 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 SPTY2D1-AS1A0A0U1RR47 76 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 A0A1B0GVX0 72 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 KRTAP12-2P59991 146 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 DEFB1P60022 68 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 MINOS1Q5TGZ0 78 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 WFDC13Q8IUB5 93 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 CIRBP-AS1Q8TBR5 109 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 CEP350Q5VT06 3117 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 WDR87Q6ZQQ6 2873 aa1.93□□□□□ -2.1
VPS35-208ENST00000568612 ABCA1O95477 2261 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 IGLV8-61A0A075B6I0 122 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 A8MTW9 85 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 INSP01308 110 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 DEFB108BQ8NET1 73 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 DHRS4-AS1Q9P1J3 65 aa1.92□□□□□ -2.1
VPS35-208ENST00000568612 CACNA1GO43497 2377 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 A0A1W2PNU3 283 aaPredicted RBP1.91□□□□□ -2.1
VPS35-208ENST00000568612 PANO1I0J062 215 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 ANGP03950 147 aaKnown RBP1.91□□□□□ -2.1
VPS35-208ENST00000568612 KRTAP1-4P0C5Y4 121 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms