RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 HBDP02042 147 aa9.79□□□□□ -0.84
CLN3-231ENST00000568422 PRLHP81277 87 aa9.79□□□□□ -0.84
CLN3-231ENST00000568422 TMEM238C9JI98 176 aa9.78□□□□□ -0.84
CLN3-231ENST00000568422 M0R378 163 aa9.77□□□□□ -0.85
CLN3-231ENST00000568422 TPRXLQ17RH7 258 aa9.76□□□□□ -0.85
CLN3-231ENST00000568422 C18orf32Q8TCD1 76 aa9.76□□□□□ -0.85
CLN3-231ENST00000568422 PLEKHB2Q96CS7 222 aa9.76□□□□□ -0.85
CLN3-231ENST00000568422 ZNF625Q96I27 306 aaPredicted RBP9.76□□□□□ -0.85
CLN3-231ENST00000568422 RETNLBQ9BQ08 111 aa9.76□□□□□ -0.85
CLN3-231ENST00000568422 TMEM170BQ5T4T1 132 aa9.75□□□□□ -0.85
CLN3-231ENST00000568422 BAGE3Q86Y29 109 aa9.75□□□□□ -0.85
CLN3-231ENST00000568422 URB1-AS1Q96HZ7 61 aa9.75□□□□□ -0.85
CLN3-231ENST00000568422 TRAPPC1Q9Y5R8 145 aa9.75□□□□□ -0.85
CLN3-231ENST00000568422 C11orf86A6NJI1 115 aa9.74□□□□□ -0.85
CLN3-231ENST00000568422 CDIP1Q9H305 208 aa9.74□□□□□ -0.85
CLN3-231ENST00000568422 IGLV7-46A0A075B6I9 117 aa9.72□□□□□ -0.85
CLN3-231ENST00000568422 PMCHL1Q16048 86 aa9.72□□□□□ -0.85
CLN3-231ENST00000568422 SPAG11AQ6PDA7 123 aa9.72□□□□□ -0.85
CLN3-231ENST00000568422 Q8NDZ9 215 aa9.72□□□□□ -0.85
CLN3-231ENST00000568422 LINC00158P58513 81 aa9.71□□□□□ -0.86
CLN3-231ENST00000568422 HIGD2AQ9BW72 106 aa9.71□□□□□ -0.86
CLN3-231ENST00000568422 ZNF706Q9Y5V0 76 aaPredicted RBP9.7□□□□□ -0.86
CLN3-231ENST00000568422 C3orf22Q8N5N4 141 aa9.69□□□□□ -0.86
CLN3-231ENST00000568422 CHTOPQ9Y3Y2 248 aaKnown RBP9.69□□□□□ -0.86
CLN3-231ENST00000568422 SPRR4Q96PI1 79 aa9.68□□□□□ -0.86
CLN3-231ENST00000568422 TRAV12-1A0A0B4J245 112 aa9.67□□□□□ -0.86
CLN3-231ENST00000568422 TMEM223A0PJW6 202 aa9.67□□□□□ -0.86
CLN3-231ENST00000568422 TRGC2P03986 189 aa9.67□□□□□ -0.86
CLN3-231ENST00000568422 LCE2AQ5TA79 106 aaPredicted RBP9.67□□□□□ -0.86
CLN3-231ENST00000568422 FAT4Q6V0I7 4981 aa9.67□□□□□ -0.86
CLN3-231ENST00000568422 PPDPFQ9H3Y8 114 aa9.66□□□□□ -0.86
CLN3-231ENST00000568422 PRYO14603 147 aa9.65□□□□□ -0.86
CLN3-231ENST00000568422 C4orf48Q5BLP8 95 aa9.65□□□□□ -0.86
CLN3-231ENST00000568422 A0A0U1RRA0 63 aa9.64□□□□□ -0.87
CLN3-231ENST00000568422 LINC00587B1AMM8 73 aa9.64□□□□□ -0.87
CLN3-231ENST00000568422 FP248Q71RG6 208 aaPredicted RBP9.64□□□□□ -0.87
CLN3-231ENST00000568422 LINC00337Q8N6G1 96 aa9.64□□□□□ -0.87
CLN3-231ENST00000568422 CHCHD1Q96BP2 118 aaKnown RBP9.64□□□□□ -0.87
CLN3-231ENST00000568422 HERV-K104P63124 156 aa9.63□□□□□ -0.87
CLN3-231ENST00000568422 BOD1L2Q8IYS8 172 aa9.63□□□□□ -0.87
CLN3-231ENST00000568422 IFI27L1Q96BM0 104 aa9.63□□□□□ -0.87
CLN3-231ENST00000568422 KRTAP9-2Q9BYQ4 174 aa9.63□□□□□ -0.87
CLN3-231ENST00000568422 KCNQ1DNQ9H478 68 aa9.63□□□□□ -0.87
CLN3-231ENST00000568422 SMIM13P0DJ93 91 aa9.62□□□□□ -0.87
CLN3-231ENST00000568422 SPRR1AP35321 89 aa9.62□□□□□ -0.87
CLN3-231ENST00000568422 MEIG1Q5JSS6 88 aa9.62□□□□□ -0.87
CLN3-231ENST00000568422 MUC17Q685J3 4493 aa9.62□□□□□ -0.87
CLN3-231ENST00000568422 S100A12P80511 92 aa9.6□□□□□ -0.87
CLN3-231ENST00000568422 MIR7-3HGQ8N6C7 128 aa9.6□□□□□ -0.87
CLN3-231ENST00000568422 ETDCA0A1B0GVM5 59 aa9.59□□□□□ -0.87
CLN3-231ENST00000568422 NCR3O14931 201 aa9.59□□□□□ -0.87
CLN3-231ENST00000568422 SMCR5Q8TEV8 140 aa9.59□□□□□ -0.87
CLN3-231ENST00000568422 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
CLN3-231ENST00000568422 KRTAP4-16G5E9R7 235 aaPredicted RBP9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 SPINK1P00995 79 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 LINC00310P59036 64 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
CLN3-231ENST00000568422 Q8NBF4 154 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
CLN3-231ENST00000568422 MYMXA0A1B0GTQ4 84 aa9.57□□□□□ -0.88
CLN3-231ENST00000568422 LINC00483Q53H64 154 aa9.57□□□□□ -0.88
CLN3-231ENST00000568422 NDUFA12Q9UI09 145 aa9.57□□□□□ -0.88
CLN3-231ENST00000568422 TRBV10-3A0A0K0K1G6 114 aa9.56□□□□□ -0.88
CLN3-231ENST00000568422 DAND5Q8N907 189 aa9.56□□□□□ -0.88
CLN3-231ENST00000568422 LOC107984156A0A0G2JMH3 177 aa9.54□□□□□ -0.88
CLN3-231ENST00000568422 HSBP1O75506 76 aa9.54□□□□□ -0.88
CLN3-231ENST00000568422 KRTAP13-3Q3SY46 172 aa9.54□□□□□ -0.88
CLN3-231ENST00000568422 ARL17AQ8IVW1 177 aa9.54□□□□□ -0.88
CLN3-231ENST00000568422 TRBV10-2A0A0K0K1G8 114 aa9.52□□□□□ -0.89
CLN3-231ENST00000568422 B5MCH6 92 aa9.52□□□□□ -0.89
CLN3-231ENST00000568422 SERF1AO75920 110 aa9.52□□□□□ -0.89
CLN3-231ENST00000568422 RPS29P62273 56 aaKnown RBP9.52□□□□□ -0.89
CLN3-231ENST00000568422 GAGE2AQ6NT46 116 aa9.51□□□□□ -0.89
CLN3-231ENST00000568422 SSBP3-AS1Q7Z2R9 100 aa9.51□□□□□ -0.89
CLN3-231ENST00000568422 FAM19A2Q8N3H0 131 aa9.51□□□□□ -0.89
CLN3-231ENST00000568422 LEPROTO15243 131 aa9.5□□□□□ -0.89
CLN3-231ENST00000568422 DDTP30046 118 aa9.5□□□□□ -0.89
CLN3-231ENST00000568422 ASB16-AS1Q495Z4 193 aa9.5□□□□□ -0.89
CLN3-231ENST00000568422 COA6Q5JTJ3 125 aaKnown RBP9.5□□□□□ -0.89
CLN3-231ENST00000568422 PLNP26678 52 aa9.49□□□□□ -0.89
CLN3-231ENST00000568422 H0Y8G0 127 aa9.48□□□□□ -0.89
CLN3-231ENST00000568422 LEPROTL1O95214 131 aa9.48□□□□□ -0.89
CLN3-231ENST00000568422 Q6ZRX8 168 aa9.48□□□□□ -0.89
CLN3-231ENST00000568422 SPANXB1Q9NS25 103 aaPredicted RBP9.48□□□□□ -0.89
CLN3-231ENST00000568422 NMUP48645 174 aa9.47□□□□□ -0.89
CLN3-231ENST00000568422 TSPEAR-AS2P59090 65 aa9.47□□□□□ -0.89
CLN3-231ENST00000568422 SEC61BP60468 96 aaKnown RBP9.47□□□□□ -0.89
CLN3-231ENST00000568422 MOBPQ13875 183 aa9.47□□□□□ -0.89
CLN3-231ENST00000568422 MIEN1Q9BRT3 115 aa9.47□□□□□ -0.89
CLN3-231ENST00000568422 IGLV9-49A0A0B4J1Y8 123 aa9.46□□□□□ -0.9
CLN3-231ENST00000568422 J3QQQ9 107 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms