RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ATP6V1G1O75348 118 aa11.22□□□□□ -0.61
CLN3-227ENST00000567495 IGKV2-28A0A075B6P5 120 aa11.2□□□□□ -0.62
CLN3-227ENST00000567495 IGKV2D-28P01615 120 aa11.2□□□□□ -0.62
CLN3-227ENST00000567495 UBE2AP49459 152 aa11.2□□□□□ -0.62
CLN3-227ENST00000567495 NDUFA12Q9UI09 145 aa11.2□□□□□ -0.62
CLN3-227ENST00000567495 MYMXA0A1B0GTQ4 84 aa11.19□□□□□ -0.62
CLN3-227ENST00000567495 SCO1O75880 301 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 DPM2O94777 84 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 FABP4P15090 132 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 MEIG1Q5JSS6 88 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 KRTAP13-1Q8IUC0 172 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 PLEKHB2Q96CS7 222 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 MAP1LC3CQ9BXW4 147 aa11.18□□□□□ -0.62
CLN3-227ENST00000567495 HERVK_113P61574 105 aa11.17□□□□□ -0.62
CLN3-227ENST00000567495 A0A0U1RRA0 63 aa11.16□□□□□ -0.62
CLN3-227ENST00000567495 LEPROTO15243 131 aa11.16□□□□□ -0.62
CLN3-227ENST00000567495 SMIM13P0DJ93 91 aa11.16□□□□□ -0.62
CLN3-227ENST00000567495 M0R378 163 aa11.15□□□□□ -0.62
CLN3-227ENST00000567495 TMEM126AQ9H061 195 aa11.15□□□□□ -0.62
CLN3-227ENST00000567495 IGKCP01834 107 aa11.14□□□□□ -0.63
CLN3-227ENST00000567495 BOD1L2Q8IYS8 172 aa11.14□□□□□ -0.63
CLN3-227ENST00000567495 MIR7-3HGQ8N6C7 128 aa11.14□□□□□ -0.63
CLN3-227ENST00000567495 Q8NDZ9 215 aa11.14□□□□□ -0.63
CLN3-227ENST00000567495 CRYGAP11844 174 aa11.13□□□□□ -0.63
CLN3-227ENST00000567495 NMUP48645 174 aa11.13□□□□□ -0.63
CLN3-227ENST00000567495 IGKV2D-26A0A0A0MRZ7 120 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 TMEM238C9JI98 176 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 J3QQQ9 107 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BKO60814 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BJP06899 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BOP23527 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BBP33778 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BDP58876 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BCP62807 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST2H2BEQ16778 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BHQ93079 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BNQ99877 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 HIST1H2BMQ99879 126 aa11.12□□□□□ -0.63
CLN3-227ENST00000567495 FAM19A1Q7Z5A9 133 aa11.11□□□□□ -0.63
CLN3-227ENST00000567495 LGALS3P17931 250 aaKnown RBP11.1□□□□□ -0.63
CLN3-227ENST00000567495 PMCHL2Q9BQD1 86 aa11.1□□□□□ -0.63
CLN3-227ENST00000567495 UBR4Q5T4S7 5183 aa11.09□□□□□ -0.63
CLN3-227ENST00000567495 TSPEAR-AS2P59090 65 aa11.09□□□□□ -0.63
CLN3-227ENST00000567495 PRLHP81277 87 aa11.09□□□□□ -0.63
CLN3-227ENST00000567495 FAM229BQ4G0N7 80 aa11.09□□□□□ -0.63
CLN3-227ENST00000567495 LRP2P98164 4655 aa11.09□□□□□ -0.63
CLN3-227ENST00000567495 LOC107984156A0A0G2JMH3 177 aa11.08□□□□□ -0.64
CLN3-227ENST00000567495 ARL17AQ8IVW1 177 aa11.08□□□□□ -0.64
CLN3-227ENST00000567495 A0A087X002 238 aa11.07□□□□□ -0.64
CLN3-227ENST00000567495 SYS1-DBNDD2H3BUS1 97 aa11.07□□□□□ -0.64
CLN3-227ENST00000567495 PRYO14603 147 aa11.06□□□□□ -0.64
CLN3-227ENST00000567495 S100A12P80511 92 aa11.06□□□□□ -0.64
CLN3-227ENST00000567495 TYMSOSQ8TAI1 123 aa11.06□□□□□ -0.64
CLN3-227ENST00000567495 KCNQ1DNQ9H478 68 aa11.05□□□□□ -0.64
CLN3-227ENST00000567495 E9PLD3 99 aa11.04□□□□□ -0.64
CLN3-227ENST00000567495 MIEN1Q9BRT3 115 aa11.04□□□□□ -0.64
CLN3-227ENST00000567495 NCR3O14931 201 aa11.03□□□□□ -0.64
CLN3-227ENST00000567495 PET117Q6UWS5 81 aa11.03□□□□□ -0.64
CLN3-227ENST00000567495 LINC00337Q8N6G1 96 aa11.03□□□□□ -0.64
CLN3-227ENST00000567495 ANAPC11Q9NYG5 84 aa11.03□□□□□ -0.64
CLN3-227ENST00000567495 TRBV10-2A0A0K0K1G8 114 aa11.02□□□□□ -0.65
CLN3-227ENST00000567495 COA6Q5JTJ3 125 aaKnown RBP11.02□□□□□ -0.65
CLN3-227ENST00000567495 HIGD2AQ9BW72 106 aa11.02□□□□□ -0.65
CLN3-227ENST00000567495 SPRR1AP35321 89 aa11.01□□□□□ -0.65
CLN3-227ENST00000567495 LINC01545Q5VT33 79 aa11.01□□□□□ -0.65
CLN3-227ENST00000567495 DAND5Q8N907 189 aa11.01□□□□□ -0.65
CLN3-227ENST00000567495 TRBV10-3A0A0K0K1G6 114 aa11□□□□□ -0.65
CLN3-227ENST00000567495 SPANXB1Q9NS25 103 aaPredicted RBP11□□□□□ -0.65
CLN3-227ENST00000567495 ZNF706Q9Y5V0 76 aaPredicted RBP11□□□□□ -0.65
CLN3-227ENST00000567495 NDUFC2O95298 119 aa10.99□□□□□ -0.65
CLN3-227ENST00000567495 A0A0J9YXY3 114 aa10.98□□□□□ -0.65
CLN3-227ENST00000567495 ETDCA0A1B0GVM5 59 aa10.98□□□□□ -0.65
CLN3-227ENST00000567495 KRTAP13-2Q52LG2 175 aa10.98□□□□□ -0.65
CLN3-227ENST00000567495 CTAG1AP78358 180 aa10.97□□□□□ -0.65
CLN3-227ENST00000567495 KRTAP4-16G5E9R7 235 aaPredicted RBP10.96□□□□□ -0.65
CLN3-227ENST00000567495 TSPAN13O95857 204 aa10.96□□□□□ -0.65
CLN3-227ENST00000567495 DDTP30046 118 aa10.96□□□□□ -0.65
CLN3-227ENST00000567495 PRR4Q16378 134 aa10.95□□□□□ -0.66
CLN3-227ENST00000567495 LINC00304Q8N9R0 145 aa10.95□□□□□ -0.66
CLN3-227ENST00000567495 SPRR4Q96PI1 79 aa10.95□□□□□ -0.66
CLN3-227ENST00000567495 TIMM17BO60830 172 aa10.94□□□□□ -0.66
CLN3-227ENST00000567495 C3orf79P0CE67 100 aa10.94□□□□□ -0.66
CLN3-227ENST00000567495 S100A7L2Q5SY68 101 aa10.94□□□□□ -0.66
CLN3-227ENST00000567495 ADAMTSL4-AS1Q5T5F5 129 aa10.94□□□□□ -0.66
CLN3-227ENST00000567495 CBY1Q9Y3M2 126 aa10.93□□□□□ -0.66
CLN3-227ENST00000567495 C20orf202A1L168 122 aa10.92□□□□□ -0.66
CLN3-227ENST00000567495 IGLV6-57P01721 117 aa10.92□□□□□ -0.66
CLN3-227ENST00000567495 KRTDAPP60985 99 aa10.92□□□□□ -0.66
CLN3-227ENST00000567495 SMCR5Q8TEV8 140 aa10.92□□□□□ -0.66
CLN3-227ENST00000567495 AKR1D1P51857 326 aa10.91□□□□□ -0.66
CLN3-227ENST00000567495 ZNF815PA8K554 130 aa10.9□□□□□ -0.66
CLN3-227ENST00000567495 B5MCH6 92 aa10.9□□□□□ -0.66
CLN3-227ENST00000567495 SOSTDC1Q6X4U4 206 aa10.9□□□□□ -0.66
CLN3-227ENST00000567495 LITAFQ99732 161 aa10.89□□□□□ -0.67
CLN3-227ENST00000567495 JOSD1Q15040 202 aaPredicted RBP10.88□□□□□ -0.67
CLN3-227ENST00000567495 SPAG11AQ6PDA7 123 aa10.88□□□□□ -0.67
CLN3-227ENST00000567495 Q6ZRX8 168 aa10.88□□□□□ -0.67
CLN3-227ENST00000567495 LINC00308Q8TCZ7 52 aa10.88□□□□□ -0.67
CLN3-227ENST00000567495 TRAV23DV6A0A075B6W5 121 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms