RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ARL17AQ8IVW1 177 aa19.76■□□□□ 0.75
CTCF-203ENST00000566078 RYR2Q92736 4967 aa19.75■□□□□ 0.75
CTCF-203ENST00000566078 CFC1BP0CG36 223 aa19.73■□□□□ 0.75
CTCF-203ENST00000566078 CFC1P0CG37 223 aa19.73■□□□□ 0.75
CTCF-203ENST00000566078 COL5A1-AS1Q5SY13 56 aa19.72■□□□□ 0.75
CTCF-203ENST00000566078 KMT2CQ8NEZ4 4911 aaKnown RBP19.71■□□□□ 0.75
CTCF-203ENST00000566078 A0A1B0GWB2 263 aa19.71■□□□□ 0.75
CTCF-203ENST00000566078 C9orf163Q8N9P6 203 aa19.71■□□□□ 0.75
CTCF-203ENST00000566078 GAGE2BQ13066 116 aa19.69■□□□□ 0.74
CTCF-203ENST00000566078 RAB37Q96AX2 223 aa19.69■□□□□ 0.74
CTCF-203ENST00000566078 A0A0B4J2C4 111 aa19.68■□□□□ 0.74
CTCF-203ENST00000566078 FUSP35637 526 aaKnown RBP eCLIP19.67■□□□□ 0.74
CTCF-203ENST00000566078 C9orf129Q5T035 196 aaKnown RBP19.67■□□□□ 0.74
CTCF-203ENST00000566078 FAT2Q9NYQ8 4349 aa19.67■□□□□ 0.74
CTCF-203ENST00000566078 LINC01620Q4KN68 170 aa19.66■□□□□ 0.74
CTCF-203ENST00000566078 Q8NDZ9 215 aa19.66■□□□□ 0.74
CTCF-203ENST00000566078 NDUFC2O95298 119 aa19.65■□□□□ 0.74
CTCF-203ENST00000566078 LBHQ53QV2 105 aaPredicted RBP19.64■□□□□ 0.73
CTCF-203ENST00000566078 DNAH11Q96DT5 4516 aa19.64■□□□□ 0.73
CTCF-203ENST00000566078 IGKV2-28A0A075B6P5 120 aa19.63■□□□□ 0.73
CTCF-203ENST00000566078 A0A096LNI7 61 aa19.63■□□□□ 0.73
CTCF-203ENST00000566078 IGKV2D-28P01615 120 aa19.63■□□□□ 0.73
CTCF-203ENST00000566078 PKIGQ9Y2B9 76 aa19.63■□□□□ 0.73
CTCF-203ENST00000566078 IGLV5-52A0A0A0MRZ9 124 aa19.62■□□□□ 0.73
CTCF-203ENST00000566078 PRO1854Q9UHT4 67 aa19.62■□□□□ 0.73
CTCF-203ENST00000566078 C16orf90A8MZG2 172 aa19.61■□□□□ 0.73
CTCF-203ENST00000566078 PRR3P79522 188 aaKnown RBP19.61■□□□□ 0.73
CTCF-203ENST00000566078 IGKV2-24A0A0C4DH68 120 aa19.6■□□□□ 0.73
CTCF-203ENST00000566078 TAX1BP3O14907 124 aa19.6■□□□□ 0.73
CTCF-203ENST00000566078 NCR3O14931 201 aa19.6■□□□□ 0.73
CTCF-203ENST00000566078 LINC00337Q8N6G1 96 aa19.58■□□□□ 0.73
CTCF-203ENST00000566078 SDIM1Q6ZPB5 146 aa19.58■□□□□ 0.72
CTCF-203ENST00000566078 VPREB1P12018 145 aa19.57■□□□□ 0.72
CTCF-203ENST00000566078 RPL13AP40429 203 aaKnown RBP19.57■□□□□ 0.72
CTCF-203ENST00000566078 PKD1P98161 4303 aa19.56■□□□□ 0.72
CTCF-203ENST00000566078 PGPEP1Q9NXJ5 209 aa19.56■□□□□ 0.72
CTCF-203ENST00000566078 TRAV13-2A0A0B4J235 113 aa19.55■□□□□ 0.72
CTCF-203ENST00000566078 H7C2G1 150 aa19.54■□□□□ 0.72
CTCF-203ENST00000566078 FAM168BA1KXE4 195 aa19.54■□□□□ 0.72
CTCF-203ENST00000566078 CHTF8P0CG12 524 aa19.54■□□□□ 0.72
CTCF-203ENST00000566078 KRTAP10-2P60368 255 aa19.54■□□□□ 0.72
CTCF-203ENST00000566078 SERTAD4-AS1Q5TG53 156 aa19.54■□□□□ 0.72
CTCF-203ENST00000566078 LINC00336Q6ZUF6 198 aa19.53■□□□□ 0.72
CTCF-203ENST00000566078 TSPAN13O95857 204 aa19.52■□□□□ 0.72
CTCF-203ENST00000566078 PLA2G2DQ9UNK4 145 aa19.52■□□□□ 0.72
CTCF-203ENST00000566078 DNAH5Q8TE73 4624 aa19.51■□□□□ 0.71
CTCF-203ENST00000566078 OR13C6PQ8NH95 151 aa19.51■□□□□ 0.71
CTCF-203ENST00000566078 NAA38Q9BRA0 125 aaKnown RBP19.51■□□□□ 0.71
CTCF-203ENST00000566078 Q1RN00 199 aa19.51■□□□□ 0.71
CTCF-203ENST00000566078 TRBV10-2A0A0K0K1G8 114 aa19.49■□□□□ 0.71
CTCF-203ENST00000566078 FAM19A5Q7Z5A7 132 aaPredicted RBP19.49■□□□□ 0.71
CTCF-203ENST00000566078 NKAPP1Q8N9T2 125 aa19.49■□□□□ 0.71
CTCF-203ENST00000566078 C9orf118A6NHY6 69 aa19.48■□□□□ 0.71
CTCF-203ENST00000566078 LINC00474Q9P2X8 69 aa19.47■□□□□ 0.71
CTCF-203ENST00000566078 H3BUT2 72 aa19.46■□□□□ 0.71
CTCF-203ENST00000566078 S100A7L2Q5SY68 101 aa19.46■□□□□ 0.71
CTCF-203ENST00000566078 M0R378 163 aa19.45■□□□□ 0.7
CTCF-203ENST00000566078 KRTAP7-1Q8IUC3 87 aa19.45■□□□□ 0.7
CTCF-203ENST00000566078 IGLV5-37A0A075B6J1 123 aa19.44■□□□□ 0.7
CTCF-203ENST00000566078 PANO1I0J062 215 aa19.43■□□□□ 0.7
CTCF-203ENST00000566078 TMEM126AQ9H061 195 aa19.43■□□□□ 0.7
CTCF-203ENST00000566078 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP19.42■□□□□ 0.7
CTCF-203ENST00000566078 A0A1W2PNN7 141 aa19.41■□□□□ 0.7
CTCF-203ENST00000566078 SPACA4Q8TDM5 124 aa19.41■□□□□ 0.7
CTCF-203ENST00000566078 IGLV6-57P01721 117 aa19.4■□□□□ 0.7
CTCF-203ENST00000566078 C22orf24Q9Y442 160 aa19.4■□□□□ 0.7
CTCF-203ENST00000566078 TRBV10-3A0A0K0K1G6 114 aa19.39■□□□□ 0.69
CTCF-203ENST00000566078 PSMB2P49721 201 aa19.39■□□□□ 0.69
CTCF-203ENST00000566078 C7orf33Q8WU49 177 aa19.39■□□□□ 0.69
CTCF-203ENST00000566078 GAGE10A6NGK3 116 aa19.38■□□□□ 0.69
CTCF-203ENST00000566078 SMIM11BQ8TCY0 68 aa19.37■□□□□ 0.69
CTCF-203ENST00000566078 RYR3Q15413 4870 aa19.37■□□□□ 0.69
CTCF-203ENST00000566078 M0QXV9 152 aa19.36■□□□□ 0.69
CTCF-203ENST00000566078 DPH3Q96FX2 82 aa19.36■□□□□ 0.69
CTCF-203ENST00000566078 A0A1W2PPM0 123 aa19.36■□□□□ 0.69
CTCF-203ENST00000566078 TRIAP1O43715 76 aa19.35■□□□□ 0.69
CTCF-203ENST00000566078 MRPL55Q7Z7F7 128 aaKnown RBP19.35■□□□□ 0.69
CTCF-203ENST00000566078 A0A1B0GV90 55 aa19.34■□□□□ 0.69
CTCF-203ENST00000566078 RPL28P46779 137 aaKnown RBP19.33■□□□□ 0.68
CTCF-203ENST00000566078 LINC00167Q96N53 147 aa19.33■□□□□ 0.68
CTCF-203ENST00000566078 TRAV23DV6A0A075B6W5 121 aa19.3■□□□□ 0.68
CTCF-203ENST00000566078 A0A1B0GVY2 172 aa19.3■□□□□ 0.68
CTCF-203ENST00000566078 FABP2P12104 132 aa19.3■□□□□ 0.68
CTCF-203ENST00000566078 DNAH8Q96JB1 4490 aa19.29■□□□□ 0.68
CTCF-203ENST00000566078 RPL37AP8A6NKH3 93 aa19.29■□□□□ 0.68
CTCF-203ENST00000566078 A0A087WYN8 130 aa19.28■□□□□ 0.68
CTCF-203ENST00000566078 SCGB1C2P0DMR2 95 aa19.28■□□□□ 0.68
CTCF-203ENST00000566078 KRTAP10-1P60331 282 aa19.28■□□□□ 0.68
CTCF-203ENST00000566078 PHF5AQ7RTV0 110 aaKnown RBP19.26■□□□□ 0.67
CTCF-203ENST00000566078 COX6CP09669 75 aa19.25■□□□□ 0.67
CTCF-203ENST00000566078 LYRM7Q5U5X0 104 aa19.25■□□□□ 0.67
CTCF-203ENST00000566078 PKHD1P08F94 4074 aa19.25■□□□□ 0.67
CTCF-203ENST00000566078 IGLV1-50A0A075B6I6 118 aa19.25■□□□□ 0.67
CTCF-203ENST00000566078 VAMP3Q15836 100 aa19.25■□□□□ 0.67
CTCF-203ENST00000566078 CBY1Q9Y3M2 126 aa19.24■□□□□ 0.67
CTCF-203ENST00000566078 C6orf99Q4VX62 202 aa19.23■□□□□ 0.67
CTCF-203ENST00000566078 EPM2AB3EWF7 344 aa19.22■□□□□ 0.67
CTCF-203ENST00000566078 KCNQ1DNQ9H478 68 aa19.22■□□□□ 0.67
CTCF-203ENST00000566078 PLAC8Q9NZF1 115 aa19.22■□□□□ 0.67
CTCF-203ENST00000566078 FAM30AQ9NZY2 134 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms