RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 IMUPQ9GZP8 106 aa9.22□□□□□ -0.93
CLK3-215ENST00000564353 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.93
CLK3-215ENST00000564353 A0A1B0GUV1 79 aa9.21□□□□□ -0.93
CLK3-215ENST00000564353 SDIM1Q6ZPB5 146 aa9.21□□□□□ -0.93
CLK3-215ENST00000564353 RETNQ9HD89 108 aa9.21□□□□□ -0.93
CLK3-215ENST00000564353 Q8IZM0 81 aa9.21□□□□□ -0.94
CLK3-215ENST00000564353 KIAA0087Q14695 138 aa9.2□□□□□ -0.94
CLK3-215ENST00000564353 C9orf66Q5T8R8 295 aa9.2□□□□□ -0.94
CLK3-215ENST00000564353 CD164L2Q6UWJ8 174 aa9.19□□□□□ -0.94
CLK3-215ENST00000564353 ANK2Q01484 3957 aa9.19□□□□□ -0.94
CLK3-215ENST00000564353 NANOS2P60321 138 aaKnown RBP9.19□□□□□ -0.94
CLK3-215ENST00000564353 F8P00451 2351 aa9.19□□□□□ -0.94
CLK3-215ENST00000564353 FBN1P35555 2871 aaKnown RBP9.18□□□□□ -0.94
CLK3-215ENST00000564353 IGHV4-30-4P0DP06 118 aa9.18□□□□□ -0.94
CLK3-215ENST00000564353 LYRM9A8MSI8 78 aa9.18□□□□□ -0.94
CLK3-215ENST00000564353 C1orf195Q5TG92 126 aa9.18□□□□□ -0.94
CLK3-215ENST00000564353 Q8NAQ8 132 aa9.18□□□□□ -0.94
CLK3-215ENST00000564353 C6orf99Q4VX62 202 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 OXLD1Q5BKU9 147 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 XAGE1AQ9HD64 81 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 LINC00846Q9NV44 126 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 H0YGX0 51 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 INAFM2P0DMQ5 153 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 CXCL5P42830 114 aa9.17□□□□□ -0.94
CLK3-215ENST00000564353 A0A087WVE0 104 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 APOC4P55056 127 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 STAB1Q9NY15 2570 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 TENM3Q9P273 2699 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 SPAG11BQ08648 103 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 LINC00643Q86TS7 51 aa9.16□□□□□ -0.94
CLK3-215ENST00000564353 ATOX1O00244 68 aa9.15□□□□□ -0.94
CLK3-215ENST00000564353 S100A7L2Q5SY68 101 aa9.15□□□□□ -0.94
CLK3-215ENST00000564353 ACYP1P07311 99 aa9.15□□□□□ -0.94
CLK3-215ENST00000564353 RPL18AQ02543 176 aaKnown RBP9.15□□□□□ -0.94
CLK3-215ENST00000564353 CYSRT1A8MQ03 144 aa9.14□□□□□ -0.95
CLK3-215ENST00000564353 HIGD2BQ4VC39 106 aa9.14□□□□□ -0.95
CLK3-215ENST00000564353 WFDC9Q8NEX5 89 aa9.14□□□□□ -0.95
CLK3-215ENST00000564353 ORMDL1Q9P0S3 153 aa9.14□□□□□ -0.95
CLK3-215ENST00000564353 SPART-AS1P0CW21 52 aa9.13□□□□□ -0.95
CLK3-215ENST00000564353 NOTCH1P46531 2555 aa9.13□□□□□ -0.95
CLK3-215ENST00000564353 LINC01561Q8N1V8 128 aa9.13□□□□□ -0.95
CLK3-215ENST00000564353 BRK1Q8WUW1 75 aa9.13□□□□□ -0.95
CLK3-215ENST00000564353 MAST4O15021 2626 aa9.12□□□□□ -0.95
CLK3-215ENST00000564353 ENHOQ6UWT2 76 aa9.12□□□□□ -0.95
CLK3-215ENST00000564353 WFDC10BQ8IUB3 73 aa9.12□□□□□ -0.95
CLK3-215ENST00000564353 Q8N814 137 aa9.12□□□□□ -0.95
CLK3-215ENST00000564353 UPK3BQ9BT76 320 aa9.1□□□□□ -0.95
CLK3-215ENST00000564353 MIFP14174 115 aa9.09□□□□□ -0.95
CLK3-215ENST00000564353 SERP2Q8N6R1 65 aa9.09□□□□□ -0.95
CLK3-215ENST00000564353 HIST1H4AP62805 103 aaKnown RBP9.09□□□□□ -0.96
CLK3-215ENST00000564353 LELP1Q5T871 98 aa9.08□□□□□ -0.96
CLK3-215ENST00000564353 LYPD5Q6UWN5 251 aa9.08□□□□□ -0.96
CLK3-215ENST00000564353 Q6ZTC4 211 aa9.08□□□□□ -0.96
CLK3-215ENST00000564353 C6orf48Q9UBA6 75 aa9.06□□□□□ -0.96
CLK3-215ENST00000564353 M0R2N4 97 aa9.06□□□□□ -0.96
CLK3-215ENST00000564353 OBSCN-AS1Q96MR7 158 aa9.05□□□□□ -0.96
CLK3-215ENST00000564353 KRTAP10-11P60412 298 aa9.05□□□□□ -0.96
CLK3-215ENST00000564353 COX17Q14061 63 aa9.05□□□□□ -0.96
CLK3-215ENST00000564353 LAMTOR3Q9UHA4 124 aa9.05□□□□□ -0.96
CLK3-215ENST00000564353 TRBV10-3A0A0K0K1G6 114 aa9.04□□□□□ -0.96
CLK3-215ENST00000564353 KPRPQ5T749 579 aaPredicted RBP9.04□□□□□ -0.96
CLK3-215ENST00000564353 PRB2P02812 416 aaPredicted RBP9.04□□□□□ -0.96
CLK3-215ENST00000564353 NDUFC2O95298 119 aa9.03□□□□□ -0.96
CLK3-215ENST00000564353 Q6ZQY7 126 aa9.03□□□□□ -0.96
CLK3-215ENST00000564353 CCKP06307 115 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 LINC00575Q6W349 94 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 ZNF561-AS1K7EIQ3 104 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 TMEM256-PLSCR3K7ERE1 68 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 CAMK2N2Q96S95 79 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 PRR34Q9NV39 138 aa9.02□□□□□ -0.97
CLK3-215ENST00000564353 FAM19A1Q7Z5A9 133 aa9.01□□□□□ -0.97
CLK3-215ENST00000564353 USP17L23D6RBM5 183 aa9.01□□□□□ -0.97
CLK3-215ENST00000564353 ESRGQ1W209 222 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 Q6ZRU5 148 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 FP248Q71RG6 208 aaPredicted RBP8.99□□□□□ -0.97
CLK3-215ENST00000564353 A0A0J9YWU9 116 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 C20orf197Q8N268 126 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 TRAV23DV6A0A075B6W5 121 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 LINC00474Q9P2X8 69 aa8.99□□□□□ -0.97
CLK3-215ENST00000564353 BAHCC1Q9P281 2608 aa8.98□□□□□ -0.97
CLK3-215ENST00000564353 IGKV2D-24A0A075B6R9 120 aa8.98□□□□□ -0.97
CLK3-215ENST00000564353 COL6A5A8TX70 2615 aa8.98□□□□□ -0.97
CLK3-215ENST00000564353 LINC00167Q96N53 147 aa8.98□□□□□ -0.97
CLK3-215ENST00000564353 JMJD7-PLA2G4BH0Y9G9 81 aa8.97□□□□□ -0.97
CLK3-215ENST00000564353 Q6JHZ5 121 aa8.97□□□□□ -0.97
CLK3-215ENST00000564353 IGLV6-57P01721 117 aa8.96□□□□□ -0.97
CLK3-215ENST00000564353 RBM3P98179 157 aaKnown RBP8.96□□□□□ -0.97
CLK3-215ENST00000564353 SERP1Q9Y6X1 66 aa8.96□□□□□ -0.97
CLK3-215ENST00000564353 SCXQ7RTU7 201 aa8.95□□□□□ -0.98
CLK3-215ENST00000564353 HAMPP81172 84 aa8.95□□□□□ -0.98
CLK3-215ENST00000564353 CSMD3Q7Z407 3707 aa8.95□□□□□ -0.98
CLK3-215ENST00000564353 NBEAL1Q6ZS30 2694 aa8.94□□□□□ -0.98
CLK3-215ENST00000564353 ZNF73O43830 326 aaPredicted RBP8.94□□□□□ -0.98
CLK3-215ENST00000564353 C15orf56Q8N910 161 aa8.94□□□□□ -0.98
CLK3-215ENST00000564353 DIRC1Q969H9 104 aa8.94□□□□□ -0.98
CLK3-215ENST00000564353 KRTAP24-1Q3LI83 254 aa8.94□□□□□ -0.98
CLK3-215ENST00000564353 CMYA5Q8N3K9 4069 aa8.93□□□□□ -0.98
CLK3-215ENST00000564353 DEFB131BA0A096LNP1 70 aa8.93□□□□□ -0.98
CLK3-215ENST00000564353 GHRHP01286 108 aa8.93□□□□□ -0.98
CLK3-215ENST00000564353 SMIM26A0A096LP01 95 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms