RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CCL18P55774 89 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 SPINK7P58062 85 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 HCP5Q6MZN7 132 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 CR1P17927 2039 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 RIF1Q5UIP0 2472 aaKnown RBP3.15□□□□□ -1.91
VPS35-205ENST00000563984 TPRP12270 2363 aaKnown RBP3.15□□□□□ -1.91
VPS35-205ENST00000563984 ZFHX4Q86UP3 3567 aa3.15□□□□□ -1.91
VPS35-205ENST00000563984 KMT2BQ9UMN6 2715 aaPredicted RBP3.14□□□□□ -1.91
VPS35-205ENST00000563984 ESPL1Q14674 2120 aa3.14□□□□□ -1.91
VPS35-205ENST00000563984 ANKRD11Q6UB99 2663 aaPredicted RBP3.14□□□□□ -1.91
VPS35-205ENST00000563984 GOLGA4Q13439 2230 aaKnown RBP3.14□□□□□ -1.91
VPS35-205ENST00000563984 NCR3O14931 201 aa3.14□□□□□ -1.91
VPS35-205ENST00000563984 NDPQ00604 133 aa3.14□□□□□ -1.91
VPS35-205ENST00000563984 SPATA8Q6RVD6 105 aa3.14□□□□□ -1.91
VPS35-205ENST00000563984 CHD6Q8TD26 2715 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 TRANK1O15050 2925 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 TRGV4A0A0C4DH28 118 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 IGLV7-43P04211 117 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 DEFB112Q30KQ8 113 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 C16orf74Q96GX8 76 aa3.13□□□□□ -1.91
VPS35-205ENST00000563984 MALRD1Q5VYJ5 2156 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 FAM186AA6NE01 2351 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 SETXQ7Z333 2677 aaKnown RBP3.12□□□□□ -1.91
VPS35-205ENST00000563984 ACACBO00763 2458 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 FASNP49327 2511 aaKnown RBP3.12□□□□□ -1.91
VPS35-205ENST00000563984 IGKV3-7A0A075B6H7 116 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 ETDCA0A1B0GVM5 59 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 A0A1W2PNU3 283 aaPredicted RBP3.12□□□□□ -1.91
VPS35-205ENST00000563984 CCL3L1P16619 93 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 SPRR4Q96PI1 79 aa3.12□□□□□ -1.91
VPS35-205ENST00000563984 CFAP47Q6ZTR5 3102 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 SDK2Q58EX2 2172 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 RNASE3P12724 160 aaKnown RBP3.11□□□□□ -1.91
VPS35-205ENST00000563984 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 COA5Q86WW8 74 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 LINC00308Q8TCZ7 52 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 DCHS1Q96JQ0 3298 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 NCOR2Q9Y618 2525 aa3.11□□□□□ -1.91
VPS35-205ENST00000563984 GPR179Q6PRD1 2367 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 REV3LO60673 3130 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 TRGV2A0A075B6R0 118 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 CCL22O00626 93 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 Q5W150 140 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 KCNQ1DNQ9H478 68 aa3.1□□□□□ -1.91
VPS35-205ENST00000563984 FLNBO75369 2602 aaKnown RBP3.09□□□□□ -1.91
VPS35-205ENST00000563984 ZNF292O60281 2723 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 CHD9Q3L8U1 2897 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 FREM3P0C091 2139 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 C9orf129Q5T035 196 aaKnown RBP3.09□□□□□ -1.91
VPS35-205ENST00000563984 TYMSOSQ8TAI1 123 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 TECTAO75443 2155 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 MED12Q93074 2177 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 DNAJC13O75165 2243 aa3.09□□□□□ -1.91
VPS35-205ENST00000563984 DOCK10Q96BY6 2186 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 MYO15AQ9UKN7 3530 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 EP300Q09472 2414 aaPredicted RBP3.08□□□□□ -1.92
VPS35-205ENST00000563984 A0A1B0GU33 70 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 IGKV2-29A2NJV5 120 aaPredicted RBP3.08□□□□□ -1.92
VPS35-205ENST00000563984 NDUFA1O15239 70 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 IGKV4-1P06312 121 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 DEFB106AQ8N104 65 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 C9orf163Q8N9P6 203 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 C4orf3Q8WVX3 66 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 RNF5Q99942 180 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 KLK12Q9UKR0 248 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 DNAH14Q0VDD8 3507 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 CACNA1HO95180 2353 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 FAM208BQ5VWN6 2430 aa3.08□□□□□ -1.92
VPS35-205ENST00000563984 MAP1BP46821 2468 aaKnown RBP3.08□□□□□ -1.92
VPS35-205ENST00000563984 IGKV3OR2-268A0A0C4DH90 116 aa3.07□□□□□ -1.92
VPS35-205ENST00000563984 ZNF861PO60384 105 aa3.07□□□□□ -1.92
VPS35-205ENST00000563984 FREM1Q5H8C1 2179 aa3.07□□□□□ -1.92
VPS35-205ENST00000563984 GVINP1Q7Z2Y8 2422 aa3.07□□□□□ -1.92
VPS35-205ENST00000563984 TRIOO75962 3097 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 IGLV4-60A0A075B6I1 120 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 LINC00959A0A1B0GUT2 108 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 IGLV3-1P01715 115 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 RPS27P42677 84 aaKnown RBP3.06□□□□□ -1.92
VPS35-205ENST00000563984 DEFB103AP81534 67 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 COX17Q14061 63 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 BRWD1Q9NSI6 2320 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 CHD7Q9P2D1 2997 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 WDR87Q6ZQQ6 2873 aa3.06□□□□□ -1.92
VPS35-205ENST00000563984 SPTBN2O15020 2390 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 DMDP11532 3685 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 CRIP1P50238 77 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 KRTAP10-1P60331 282 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 SPINT4Q6UDR6 99 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 Q6ZTI0 123 aa3.05□□□□□ -1.92
VPS35-205ENST00000563984 DIDO1Q9BTC0 2240 aaKnown RBP3.04□□□□□ -1.92
VPS35-205ENST00000563984 USP24Q9UPU5 2620 aa3.04□□□□□ -1.92
VPS35-205ENST00000563984 MAST4O15021 2626 aa3.04□□□□□ -1.92
VPS35-205ENST00000563984 NAV2Q8IVL1 2488 aa3.03□□□□□ -1.92
VPS35-205ENST00000563984 GCN1Q92616 2671 aaKnown RBP3.03□□□□□ -1.92
VPS35-205ENST00000563984 COX7BP24311 80 aa3.03□□□□□ -1.92
VPS35-205ENST00000563984 SMIM11BQ8TCY0 68 aa3.03□□□□□ -1.92
VPS35-205ENST00000563984 CEP250Q9BV73 2442 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 DMXL1Q9Y485 3027 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 COL4A4P53420 1690 aaPredicted RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms