RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 KRTAP13-1Q8IUC0 172 aa10.44□□□□□ -0.74
NME3-205ENST00000563854 CHCHD1Q96BP2 118 aaKnown RBP10.44□□□□□ -0.74
NME3-205ENST00000563854 YPEL4Q96NS1 127 aa10.44□□□□□ -0.74
NME3-205ENST00000563854 Q8NDZ9 215 aa10.43□□□□□ -0.74
NME3-205ENST00000563854 TMEM126AQ9H061 195 aa10.43□□□□□ -0.74
NME3-205ENST00000563854 TMEM223A0PJW6 202 aa10.42□□□□□ -0.74
NME3-205ENST00000563854 CBLN2Q8IUK8 224 aa10.42□□□□□ -0.74
NME3-205ENST00000563854 TRAV12-1A0A0B4J245 112 aa10.41□□□□□ -0.74
NME3-205ENST00000563854 H0Y8G0 127 aa10.41□□□□□ -0.74
NME3-205ENST00000563854 HSBP1O75506 76 aa10.41□□□□□ -0.74
NME3-205ENST00000563854 FAM19A2Q8N3H0 131 aa10.4□□□□□ -0.74
NME3-205ENST00000563854 M0R378 163 aa10.39□□□□□ -0.75
NME3-205ENST00000563854 ATP6V1G1O75348 118 aa10.39□□□□□ -0.75
NME3-205ENST00000563854 MEIG1Q5JSS6 88 aa10.39□□□□□ -0.75
NME3-205ENST00000563854 KRTAP13-2Q52LG2 175 aa10.38□□□□□ -0.75
NME3-205ENST00000563854 SMIM13P0DJ93 91 aa10.37□□□□□ -0.75
NME3-205ENST00000563854 IGKV2D-26A0A0A0MRZ7 120 aa10.36□□□□□ -0.75
NME3-205ENST00000563854 FAM229BQ4G0N7 80 aa10.36□□□□□ -0.75
NME3-205ENST00000563854 TRGC2P03986 189 aa10.35□□□□□ -0.75
NME3-205ENST00000563854 HIGD2AQ9BW72 106 aa10.35□□□□□ -0.75
NME3-205ENST00000563854 NCR3O14931 201 aa10.34□□□□□ -0.75
NME3-205ENST00000563854 BOD1L2Q8IYS8 172 aa10.34□□□□□ -0.75
NME3-205ENST00000563854 LINC00304Q8N9R0 145 aa10.34□□□□□ -0.75
NME3-205ENST00000563854 MIR7-3HGQ8N6C7 128 aa10.33□□□□□ -0.76
NME3-205ENST00000563854 NDUFA12Q9UI09 145 aa10.33□□□□□ -0.76
NME3-205ENST00000563854 SERF1AO75920 110 aa10.32□□□□□ -0.76
NME3-205ENST00000563854 HERV-K104P63124 156 aa10.32□□□□□ -0.76
NME3-205ENST00000563854 RETNLBQ9BQ08 111 aa10.32□□□□□ -0.76
NME3-205ENST00000563854 LEPROTL1O95214 131 aa10.31□□□□□ -0.76
NME3-205ENST00000563854 PLEKHB2Q96CS7 222 aa10.31□□□□□ -0.76
NME3-205ENST00000563854 MYMXA0A1B0GTQ4 84 aa10.3□□□□□ -0.76
NME3-205ENST00000563854 C3orf22Q8N5N4 141 aa10.29□□□□□ -0.76
NME3-205ENST00000563854 PRYO14603 147 aa10.28□□□□□ -0.76
NME3-205ENST00000563854 FABP4P15090 132 aa10.28□□□□□ -0.76
NME3-205ENST00000563854 LINC00310P59036 64 aa10.28□□□□□ -0.76
NME3-205ENST00000563854 TSPEAR-AS2P59090 65 aa10.28□□□□□ -0.76
NME3-205ENST00000563854 MAP1LC3CQ9BXW4 147 aa10.28□□□□□ -0.76
NME3-205ENST00000563854 LINC00587B1AMM8 73 aa10.27□□□□□ -0.77
NME3-205ENST00000563854 PMCHL2Q9BQD1 86 aa10.27□□□□□ -0.77
NME3-205ENST00000563854 LEPROTO15243 131 aa10.26□□□□□ -0.77
NME3-205ENST00000563854 PLNP26678 52 aa10.26□□□□□ -0.77
NME3-205ENST00000563854 SLC7A5P1Q8MH63 180 aa10.26□□□□□ -0.77
NME3-205ENST00000563854 DAND5Q8N907 189 aa10.26□□□□□ -0.77
NME3-205ENST00000563854 HSPB8Q9UJY1 196 aa10.26□□□□□ -0.77
NME3-205ENST00000563854 ETDCA0A1B0GVM5 59 aa10.25□□□□□ -0.77
NME3-205ENST00000563854 HERVK_113P61574 105 aa10.25□□□□□ -0.77
NME3-205ENST00000563854 SPRR4Q96PI1 79 aa10.25□□□□□ -0.77
NME3-205ENST00000563854 TRBV10-3A0A0K0K1G6 114 aa10.24□□□□□ -0.77
NME3-205ENST00000563854 DPM2O94777 84 aa10.24□□□□□ -0.77
NME3-205ENST00000563854 ZNF706Q9Y5V0 76 aaPredicted RBP10.24□□□□□ -0.77
NME3-205ENST00000563854 J3QQQ9 107 aa10.22□□□□□ -0.77
NME3-205ENST00000563854 LGALS3P17931 250 aaKnown RBP10.22□□□□□ -0.77
NME3-205ENST00000563854 S100A12P80511 92 aa10.22□□□□□ -0.77
NME3-205ENST00000563854 LINC00337Q8N6G1 96 aa10.22□□□□□ -0.77
NME3-205ENST00000563854 PPDPFQ9H3Y8 114 aa10.22□□□□□ -0.77
NME3-205ENST00000563854 KCNQ1DNQ9H478 68 aa10.22□□□□□ -0.77
NME3-205ENST00000563854 IGKCP01834 107 aa10.21□□□□□ -0.77
NME3-205ENST00000563854 SMCR5Q8TEV8 140 aa10.21□□□□□ -0.77
NME3-205ENST00000563854 SPRR1AP35321 89 aa10.2□□□□□ -0.78
NME3-205ENST00000563854 MIEN1Q9BRT3 115 aa10.2□□□□□ -0.78
NME3-205ENST00000563854 COLCA2A8K830 154 aa10.19□□□□□ -0.78
NME3-205ENST00000563854 DDTP30046 118 aa10.18□□□□□ -0.78
NME3-205ENST00000563854 IGLV7-46A0A075B6I9 117 aa10.17□□□□□ -0.78
NME3-205ENST00000563854 KRTAP4-16G5E9R7 235 aaPredicted RBP10.17□□□□□ -0.78
NME3-205ENST00000563854 NMUP48645 174 aa10.17□□□□□ -0.78
NME3-205ENST00000563854 NPC2P61916 151 aa10.17□□□□□ -0.78
NME3-205ENST00000563854 C4orf48Q5BLP8 95 aa10.17□□□□□ -0.78
NME3-205ENST00000563854 CDIP1Q9H305 208 aa10.16□□□□□ -0.78
NME3-205ENST00000563854 S100A7L2Q5SY68 101 aa10.15□□□□□ -0.78
NME3-205ENST00000563854 GAGE2AQ6NT46 116 aa10.15□□□□□ -0.78
NME3-205ENST00000563854 SPAG11AQ6PDA7 123 aa10.15□□□□□ -0.78
NME3-205ENST00000563854 Q8NBF4 154 aa10.15□□□□□ -0.78
NME3-205ENST00000563854 SPANXB1Q9NS25 103 aaPredicted RBP10.15□□□□□ -0.78
NME3-205ENST00000563854 MUC2Q02817 5179 aa10.14□□□□□ -0.79
NME3-205ENST00000563854 TRBV10-2A0A0K0K1G8 114 aa10.14□□□□□ -0.79
NME3-205ENST00000563854 B5MCH6 92 aa10.14□□□□□ -0.79
NME3-205ENST00000563854 LOC107984156A0A0G2JMH3 177 aa10.13□□□□□ -0.79
NME3-205ENST00000563854 CTAG1AP78358 180 aa10.13□□□□□ -0.79
NME3-205ENST00000563854 ARL17AQ8IVW1 177 aa10.13□□□□□ -0.79
NME3-205ENST00000563854 ERC2-IT1O76042 136 aa10.12□□□□□ -0.79
NME3-205ENST00000563854 TPRXLQ17RH7 258 aa10.12□□□□□ -0.79
NME3-205ENST00000563854 IGLV9-49A0A0B4J1Y8 123 aa10.11□□□□□ -0.79
NME3-205ENST00000563854 A0A0J9YXY3 114 aa10.11□□□□□ -0.79
NME3-205ENST00000563854 A0A0U1RQV1 116 aa10.11□□□□□ -0.79
NME3-205ENST00000563854 E9PLD3 99 aa10.1□□□□□ -0.79
NME3-205ENST00000563854 NDUFC2O95298 119 aa10.1□□□□□ -0.79
NME3-205ENST00000563854 MOBPQ13875 183 aa10.1□□□□□ -0.79
NME3-205ENST00000563854 SOSTDC1Q6X4U4 206 aa10.1□□□□□ -0.79
NME3-205ENST00000563854 TRAV23DV6A0A075B6W5 121 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 SYS1-DBNDD2H3BUS1 97 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 LINC00483Q53H64 154 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 ADAMTSL4-AS1Q5T5F5 129 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 Q6ZRX8 168 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 Q9BRP9 147 aa10.09□□□□□ -0.79
NME3-205ENST00000563854 EIF4EBP3O60516 100 aaPredicted RBP10.08□□□□□ -0.8
NME3-205ENST00000563854 IGLV6-57P01721 117 aa10.08□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BKO60814 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BJP06899 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BOP23527 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BBP33778 126 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms