RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TRAV12-1A0A0B4J245 112 aa10.01□□□□□ -0.81
VPS9D1-203ENST00000563798 SNAPINO95295 136 aa10.01□□□□□ -0.81
VPS9D1-203ENST00000563798 APOC3P02656 99 aa10.01□□□□□ -0.81
VPS9D1-203ENST00000563798 LINC00304Q8N9R0 145 aa10.01□□□□□ -0.81
VPS9D1-203ENST00000563798 CHTOPQ9Y3Y2 248 aaKnown RBP10.01□□□□□ -0.81
VPS9D1-203ENST00000563798 TMEM223A0PJW6 202 aa10□□□□□ -0.81
VPS9D1-203ENST00000563798 SVBPQ8N300 66 aa10□□□□□ -0.81
VPS9D1-203ENST00000563798 CHCHD1Q96BP2 118 aaKnown RBP10□□□□□ -0.81
VPS9D1-203ENST00000563798 PLEKHB2Q96CS7 222 aa10□□□□□ -0.81
VPS9D1-203ENST00000563798 YPEL4Q96NS1 127 aa10□□□□□ -0.81
VPS9D1-203ENST00000563798 IGKV2D-26A0A0A0MRZ7 120 aa9.99□□□□□ -0.81
VPS9D1-203ENST00000563798 NDUFA5Q16718 116 aa9.98□□□□□ -0.81
VPS9D1-203ENST00000563798 LINC00158P58513 81 aa9.97□□□□□ -0.81
VPS9D1-203ENST00000563798 IFI27L1Q96BM0 104 aa9.97□□□□□ -0.81
VPS9D1-203ENST00000563798 KRTAP9-2Q9BYQ4 174 aa9.97□□□□□ -0.81
VPS9D1-203ENST00000563798 CBLN2Q8IUK8 224 aa9.96□□□□□ -0.82
VPS9D1-203ENST00000563798 HERV-K104P63124 156 aa9.93□□□□□ -0.82
VPS9D1-203ENST00000563798 TPRXLQ17RH7 258 aa9.93□□□□□ -0.82
VPS9D1-203ENST00000563798 A0A0U1RQV1 116 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 SMIM13P0DJ93 91 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 SPRR1AP35321 89 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 SPRR4Q96PI1 79 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 RETNLBQ9BQ08 111 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 HIGD2AQ9BW72 106 aa9.92□□□□□ -0.82
VPS9D1-203ENST00000563798 A0A0U1RRA0 63 aa9.91□□□□□ -0.82
VPS9D1-203ENST00000563798 LINC00587B1AMM8 73 aa9.91□□□□□ -0.82
VPS9D1-203ENST00000563798 PRYO14603 147 aa9.91□□□□□ -0.82
VPS9D1-203ENST00000563798 C3orf22Q8N5N4 141 aa9.91□□□□□ -0.82
VPS9D1-203ENST00000563798 KCNQ1DNQ9H478 68 aa9.91□□□□□ -0.82
VPS9D1-203ENST00000563798 SPAG11AQ6PDA7 123 aa9.9□□□□□ -0.82
VPS9D1-203ENST00000563798 LINC00337Q8N6G1 96 aa9.9□□□□□ -0.82
VPS9D1-203ENST00000563798 KRTAP4-16G5E9R7 235 aaPredicted RBP9.89□□□□□ -0.83
VPS9D1-203ENST00000563798 ATP6V1G1O75348 118 aa9.89□□□□□ -0.83
VPS9D1-203ENST00000563798 BOD1L2Q8IYS8 172 aa9.89□□□□□ -0.83
VPS9D1-203ENST00000563798 MIR7-3HGQ8N6C7 128 aa9.89□□□□□ -0.83
VPS9D1-203ENST00000563798 ZNF706Q9Y5V0 76 aaPredicted RBP9.89□□□□□ -0.83
VPS9D1-203ENST00000563798 IGLV7-46A0A075B6I9 117 aa9.88□□□□□ -0.83
VPS9D1-203ENST00000563798 HSBP1O75506 76 aa9.88□□□□□ -0.83
VPS9D1-203ENST00000563798 MEIG1Q5JSS6 88 aa9.88□□□□□ -0.83
VPS9D1-203ENST00000563798 NDUFA12Q9UI09 145 aa9.88□□□□□ -0.83
VPS9D1-203ENST00000563798 LOC107984156A0A0G2JMH3 177 aa9.87□□□□□ -0.83
VPS9D1-203ENST00000563798 ARL17AQ8IVW1 177 aa9.87□□□□□ -0.83
VPS9D1-203ENST00000563798 FAM19A2Q8N3H0 131 aa9.87□□□□□ -0.83
VPS9D1-203ENST00000563798 KRTAP9-6A0A140TA67 174 aa9.86□□□□□ -0.83
VPS9D1-203ENST00000563798 MYMXA0A1B0GTQ4 84 aa9.86□□□□□ -0.83
VPS9D1-203ENST00000563798 MAP1LC3CQ9BXW4 147 aa9.85□□□□□ -0.83
VPS9D1-203ENST00000563798 NCR3O14931 201 aa9.84□□□□□ -0.83
VPS9D1-203ENST00000563798 CDIP1Q9H305 208 aa9.84□□□□□ -0.83
VPS9D1-203ENST00000563798 MUC17Q685J3 4493 aa9.84□□□□□ -0.83
VPS9D1-203ENST00000563798 FAT4Q6V0I7 4981 aa9.84□□□□□ -0.83
VPS9D1-203ENST00000563798 TRBV10-3A0A0K0K1G6 114 aa9.83□□□□□ -0.84
VPS9D1-203ENST00000563798 LEPROTO15243 131 aa9.83□□□□□ -0.84
VPS9D1-203ENST00000563798 LINC00310P59036 64 aa9.83□□□□□ -0.84
VPS9D1-203ENST00000563798 LINC00483Q53H64 154 aa9.83□□□□□ -0.84
VPS9D1-203ENST00000563798 SMCR5Q8TEV8 140 aa9.83□□□□□ -0.84
VPS9D1-203ENST00000563798 LEPROTL1O95214 131 aa9.82□□□□□ -0.84
VPS9D1-203ENST00000563798 TSPEAR-AS2P59090 65 aa9.82□□□□□ -0.84
VPS9D1-203ENST00000563798 FP248Q71RG6 208 aaPredicted RBP9.82□□□□□ -0.84
VPS9D1-203ENST00000563798 TRBV10-2A0A0K0K1G8 114 aa9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 ETDCA0A1B0GVM5 59 aa9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 TRGC2P03986 189 aa9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 PLNP26678 52 aa9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 LCE2AQ5TA79 106 aaPredicted RBP9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 PPDPFQ9H3Y8 114 aa9.81□□□□□ -0.84
VPS9D1-203ENST00000563798 B5MCH6 92 aa9.79□□□□□ -0.84
VPS9D1-203ENST00000563798 SERF1AO75920 110 aa9.79□□□□□ -0.84
VPS9D1-203ENST00000563798 S100A12P80511 92 aa9.79□□□□□ -0.84
VPS9D1-203ENST00000563798 C4orf48Q5BLP8 95 aa9.79□□□□□ -0.84
VPS9D1-203ENST00000563798 Q8NBF4 154 aa9.79□□□□□ -0.84
VPS9D1-203ENST00000563798 H0Y8G0 127 aa9.78□□□□□ -0.84
VPS9D1-203ENST00000563798 J3QQQ9 107 aa9.78□□□□□ -0.84
VPS9D1-203ENST00000563798 NMUP48645 174 aa9.78□□□□□ -0.84
VPS9D1-203ENST00000563798 SPINK1P00995 79 aa9.77□□□□□ -0.85
VPS9D1-203ENST00000563798 DAND5Q8N907 189 aa9.77□□□□□ -0.85
VPS9D1-203ENST00000563798 HSPB8Q9UJY1 196 aa9.77□□□□□ -0.85
VPS9D1-203ENST00000563798 DPM2O94777 84 aa9.76□□□□□ -0.85
VPS9D1-203ENST00000563798 NDUFC2O95298 119 aa9.76□□□□□ -0.85
VPS9D1-203ENST00000563798 DDTP30046 118 aa9.76□□□□□ -0.85
VPS9D1-203ENST00000563798 SPANXB1Q9NS25 103 aaPredicted RBP9.76□□□□□ -0.85
VPS9D1-203ENST00000563798 HERVK_113P61574 105 aa9.75□□□□□ -0.85
VPS9D1-203ENST00000563798 ERC2-IT1O76042 136 aa9.74□□□□□ -0.85
VPS9D1-203ENST00000563798 IGLV6-57P01721 117 aa9.74□□□□□ -0.85
VPS9D1-203ENST00000563798 RPS29P62273 56 aaKnown RBP9.74□□□□□ -0.85
VPS9D1-203ENST00000563798 Q6ZRX8 168 aa9.74□□□□□ -0.85
VPS9D1-203ENST00000563798 IGKCP01834 107 aa9.73□□□□□ -0.85
VPS9D1-203ENST00000563798 KRTAP13-3Q3SY46 172 aa9.73□□□□□ -0.85
VPS9D1-203ENST00000563798 GAGE2AQ6NT46 116 aa9.73□□□□□ -0.85
VPS9D1-203ENST00000563798 SSBP3-AS1Q7Z2R9 100 aa9.73□□□□□ -0.85
VPS9D1-203ENST00000563798 Q9BRP9 147 aa9.73□□□□□ -0.85
VPS9D1-203ENST00000563798 LGALS3P17931 250 aaKnown RBP9.72□□□□□ -0.85
VPS9D1-203ENST00000563798 FABP4P15090 132 aa9.71□□□□□ -0.86
VPS9D1-203ENST00000563798 MIEN1Q9BRT3 115 aa9.71□□□□□ -0.86
VPS9D1-203ENST00000563798 COLCA2A8K830 154 aa9.7□□□□□ -0.86
VPS9D1-203ENST00000563798 PMCHL2Q9BQD1 86 aa9.7□□□□□ -0.86
VPS9D1-203ENST00000563798 A0A0J9YXY3 114 aa9.68□□□□□ -0.86
VPS9D1-203ENST00000563798 E9PLD3 99 aa9.68□□□□□ -0.86
VPS9D1-203ENST00000563798 MOBPQ13875 183 aa9.68□□□□□ -0.86
VPS9D1-203ENST00000563798 JOSD1Q15040 202 aaPredicted RBP9.68□□□□□ -0.86
VPS9D1-203ENST00000563798 S100A7L2Q5SY68 101 aa9.68□□□□□ -0.86
VPS9D1-203ENST00000563798 SOSTDC1Q6X4U4 206 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms