RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 EIF4EBP3O60516 100 aaPredicted RBP5.91□□□□□ -1.46
VPS39-207ENST00000563692 RPL13AP40429 203 aaKnown RBP5.91□□□□□ -1.46
VPS39-207ENST00000563692 C15orf56Q8N910 161 aa5.91□□□□□ -1.46
VPS39-207ENST00000563692 LINC00526Q96FQ7 95 aa5.91□□□□□ -1.46
VPS39-207ENST00000563692 A0A1B0GVY2 172 aa5.9□□□□□ -1.46
VPS39-207ENST00000563692 NDUFC2O95298 119 aa5.9□□□□□ -1.46
VPS39-207ENST00000563692 SYCNQ0VAF6 134 aa5.9□□□□□ -1.46
VPS39-207ENST00000563692 C9orf116Q5BN46 136 aaPredicted RBP5.9□□□□□ -1.46
VPS39-207ENST00000563692 C10orf25Q5T742 122 aa5.9□□□□□ -1.46
VPS39-207ENST00000563692 C6orf48Q9UBA6 75 aa5.9□□□□□ -1.46
VPS39-207ENST00000563692 VPS13DQ5THJ4 4388 aa5.9□□□□□ -1.47
VPS39-207ENST00000563692 PSCAO43653 123 aa5.89□□□□□ -1.47
VPS39-207ENST00000563692 RNF151Q2KHN1 245 aa5.89□□□□□ -1.47
VPS39-207ENST00000563692 DNAH6Q9C0G6 4158 aa5.89□□□□□ -1.47
VPS39-207ENST00000563692 USP17L23D6RBM5 183 aa5.88□□□□□ -1.47
VPS39-207ENST00000563692 F8W1H4 67 aa5.88□□□□□ -1.47
VPS39-207ENST00000563692 ATXN8Q156A1 80 aa5.88□□□□□ -1.47
VPS39-207ENST00000563692 Q6ZRU5 148 aa5.88□□□□□ -1.47
VPS39-207ENST00000563692 OR13C6PQ8NH95 151 aa5.88□□□□□ -1.47
VPS39-207ENST00000563692 C16orf90A8MZG2 172 aa5.87□□□□□ -1.47
VPS39-207ENST00000563692 NDUFC2-KCTD14E9PQ53 114 aa5.87□□□□□ -1.47
VPS39-207ENST00000563692 H3BMG7 143 aa5.87□□□□□ -1.47
VPS39-207ENST00000563692 TNP2Q05952 138 aa5.87□□□□□ -1.47
VPS39-207ENST00000563692 C14orf177Q52M58 125 aa5.87□□□□□ -1.47
VPS39-207ENST00000563692 IGKV2-28A0A075B6P5 120 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 TRIAP1O43715 76 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 IGKV2D-28P01615 120 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 RPL28P46779 137 aaKnown RBP5.86□□□□□ -1.47
VPS39-207ENST00000563692 CARD19Q96LW7 228 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 TMEM126AQ9H061 195 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 DNAH10Q8IVF4 4471 aa5.86□□□□□ -1.47
VPS39-207ENST00000563692 HECTD4Q9Y4D8 3996 aa5.85□□□□□ -1.47
VPS39-207ENST00000563692 H0YGX0 51 aa5.85□□□□□ -1.47
VPS39-207ENST00000563692 TCL1BO95988 128 aa5.85□□□□□ -1.47
VPS39-207ENST00000563692 S100A7L2Q5SY68 101 aa5.85□□□□□ -1.47
VPS39-207ENST00000563692 LINC00337Q8N6G1 96 aa5.85□□□□□ -1.47
VPS39-207ENST00000563692 TRBV10-2A0A0K0K1G8 114 aa5.84□□□□□ -1.47
VPS39-207ENST00000563692 TLX1NBP0CAT3 122 aa5.84□□□□□ -1.47
VPS39-207ENST00000563692 KRTAP1-5Q9BYS1 174 aa5.84□□□□□ -1.47
VPS39-207ENST00000563692 CBY1Q9Y3M2 126 aa5.84□□□□□ -1.47
VPS39-207ENST00000563692 SNCGO76070 127 aa5.83□□□□□ -1.48
VPS39-207ENST00000563692 PRR3P79522 188 aaKnown RBP5.83□□□□□ -1.48
VPS39-207ENST00000563692 GAGE2EQ4V326 116 aa5.83□□□□□ -1.48
VPS39-207ENST00000563692 SMIM11BQ8TCY0 68 aa5.83□□□□□ -1.48
VPS39-207ENST00000563692 XAGE1AQ9HD64 81 aa5.83□□□□□ -1.48
VPS39-207ENST00000563692 GAGE2DQ9UEU5 116 aa5.83□□□□□ -1.48
VPS39-207ENST00000563692 LECT2O14960 151 aa5.82□□□□□ -1.48
VPS39-207ENST00000563692 PKIGQ9Y2B9 76 aa5.82□□□□□ -1.48
VPS39-207ENST00000563692 LOC107984640A0A0U1RRK4 108 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 M0R378 163 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 LST1O00453 97 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 NCR3O14931 201 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 RPL18AQ02543 176 aaKnown RBP5.81□□□□□ -1.48
VPS39-207ENST00000563692 LINC01620Q4KN68 170 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 Q6ZRP5 223 aa5.81□□□□□ -1.48
VPS39-207ENST00000563692 C9JAW5 83 aa5.8□□□□□ -1.48
VPS39-207ENST00000563692 SLPIP03973 132 aa5.8□□□□□ -1.48
VPS39-207ENST00000563692 CNBPP62633 177 aaKnown RBP5.8□□□□□ -1.48
VPS39-207ENST00000563692 WFDC2Q14508 124 aa5.8□□□□□ -1.48
VPS39-207ENST00000563692 CLEC2BQ92478 149 aa5.8□□□□□ -1.48
VPS39-207ENST00000563692 PLA2G2DQ9UNK4 145 aa5.8□□□□□ -1.48
VPS39-207ENST00000563692 M0QXV9 152 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 SLC25A20O43772 301 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 CDK2AP2O75956 126 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 IGLV6-57P01721 117 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 TRACP01848 142 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 NKAPP1Q8N9T2 125 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 PRO0461Q9UI25 63 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 DNAH2Q9P225 4427 aa5.79□□□□□ -1.48
VPS39-207ENST00000563692 FAT2Q9NYQ8 4349 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 PKHD1P08F94 4074 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 A0A1B0GX51 115 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 DNAL4O96015 105 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 VPREB1P12018 145 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 GAGE2BQ13066 116 aa5.78□□□□□ -1.48
VPS39-207ENST00000563692 Q6ZRN7 208 aaPredicted RBP5.78□□□□□ -1.48
VPS39-207ENST00000563692 H3BT86 120 aa5.77□□□□□ -1.49
VPS39-207ENST00000563692 J3QR89 54 aa5.77□□□□□ -1.49
VPS39-207ENST00000563692 K7ERU9 68 aa5.77□□□□□ -1.49
VPS39-207ENST00000563692 C9orf129Q5T035 196 aaKnown RBP5.77□□□□□ -1.49
VPS39-207ENST00000563692 ANKRD29Q8N6D5 301 aa5.77□□□□□ -1.49
VPS39-207ENST00000563692 Q8NDZ9 215 aa5.77□□□□□ -1.49
VPS39-207ENST00000563692 TRAV23DV6A0A075B6W5 121 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 TRBV10-3A0A0K0K1G6 114 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 LRCOL1A6NCL2 159 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 KRTAP10-2P60368 255 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 ETDBQ3ZM63 59 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 C6orf99Q4VX62 202 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 MTURNQ8N3F0 131 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 LINC01600Q96MT4 127 aa5.76□□□□□ -1.49
VPS39-207ENST00000563692 IGLV5-37A0A075B6J1 123 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.75□□□□□ -1.49
VPS39-207ENST00000563692 A0A087WTM6 91 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 TRBV7-6A0A0J9YX20 115 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 SMCPP49901 116 aaPredicted RBP5.75□□□□□ -1.49
VPS39-207ENST00000563692 OCIAD2Q56VL3 154 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 TEN1Q86WV5 123 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 DIRC1Q969H9 104 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 DNAH17Q9UFH2 4485 aa5.75□□□□□ -1.49
VPS39-207ENST00000563692 ZNF73O43830 326 aaPredicted RBP5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms