RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 C16orf90A8MZG2 172 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 HSBP1O75506 76 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 ATP5LO75964 103 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 SDIM1Q6ZPB5 146 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 C9orf163Q8N9P6 203 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 IFI27L1Q96BM0 104 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 C2orf88Q9BSF0 95 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 CDKN2A-AS1Q9UH64 79 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 LRP1Q07954 4544 aaKnown RBP3.77□□□□□ -1.81
LRRC28-220ENST00000561253 FAT3Q8TDW7 4589 aa3.77□□□□□ -1.81
LRRC28-220ENST00000561253 C11orf86A6NJI1 115 aa3.76□□□□□ -1.81
LRRC28-220ENST00000561253 PANO1I0J062 215 aa3.76□□□□□ -1.81
LRRC28-220ENST00000561253 ZNF22P17026 224 aaPredicted RBP3.76□□□□□ -1.81
LRRC28-220ENST00000561253 HERVK_113P63121 156 aa3.76□□□□□ -1.81
LRRC28-220ENST00000561253 CIRBPQ14011 172 aaKnown RBP3.76□□□□□ -1.81
LRRC28-220ENST00000561253 LINC00526Q96FQ7 95 aa3.76□□□□□ -1.81
LRRC28-220ENST00000561253 PACRGQ96M98 296 aaPredicted RBP3.76□□□□□ -1.81
LRRC28-220ENST00000561253 LEPROTL1O95214 131 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 SEC11AP67812 179 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 SPAG11BQ08648 103 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 PRR4Q16378 134 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 Q6ZRU5 148 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 OR10D4PQ8NGN7 298 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 PPDPFQ9H3Y8 114 aa3.75□□□□□ -1.81
LRRC28-220ENST00000561253 MRPL35Q9NZE8 188 aaKnown RBP3.75□□□□□ -1.81
LRRC28-220ENST00000561253 FLG2Q5D862 2391 aaPredicted RBP3.74□□□□□ -1.81
LRRC28-220ENST00000561253 F8VRH5 84 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 FABP4P15090 132 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 NDUFA6P56556 154 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 LINC00469Q8N7U9 141 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 ORAOV1Q8WV07 137 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 CHAC1Q9BUX1 264 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 HSPB8Q9UJY1 196 aa3.74□□□□□ -1.81
LRRC28-220ENST00000561253 APOMO95445 188 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 SYCNQ0VAF6 134 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 LINC01545Q5VT33 79 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 C2orf82Q6UX34 121 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 UNQ6190/PRO20217Q6UXQ8 127 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 Q8IZM0 81 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 HIST3H2BBQ8N257 126 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 CARD19Q96LW7 228 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 HIST1H2BLQ99880 126 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 GEMIN7Q9H840 131 aaKnown RBP3.73□□□□□ -1.81
LRRC28-220ENST00000561253 C6orf48Q9UBA6 75 aa3.73□□□□□ -1.81
LRRC28-220ENST00000561253 CHTOPQ9Y3Y2 248 aaKnown RBP3.73□□□□□ -1.81
LRRC28-220ENST00000561253 A0A096LNI7 61 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 TMEM223A0PJW6 202 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 SYS1-DBNDD2H3BUS1 97 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 SPINK8P0C7L1 97 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 C3orf79P0CE67 100 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 CHTF8P0CG12 524 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 C9orf129Q5T035 196 aaKnown RBP3.72□□□□□ -1.81
LRRC28-220ENST00000561253 SPACA4Q8TDM5 124 aa3.72□□□□□ -1.81
LRRC28-220ENST00000561253 ZNF625Q96I27 306 aaPredicted RBP3.72□□□□□ -1.81
LRRC28-220ENST00000561253 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.71□□□□□ -1.82
LRRC28-220ENST00000561253 TLX1NBP0CAT3 122 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 TSPEAR-AS2P59090 65 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 HAMPP81172 84 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 C9orf116Q5BN46 136 aaPredicted RBP3.71□□□□□ -1.82
LRRC28-220ENST00000561253 SCXQ7RTU7 201 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 MTURNQ8N3F0 131 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 CIRBP-AS1Q8TBR5 109 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 COX7B2Q8TF08 81 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 CAMK2N2Q96S95 79 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 PMCHL2Q9BQD1 86 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 TNXBP22105 4242 aa3.71□□□□□ -1.82
LRRC28-220ENST00000561253 HERC1Q15751 4861 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 TRBV30A0A0K0K1B3 111 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 H3BRM9 83 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 NDUFA1O15239 70 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 DPM2O94777 84 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 PLNP26678 52 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 CXCL5P42830 114 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 KRTAP10-4P60372 401 aaPredicted RBP3.7□□□□□ -1.82
LRRC28-220ENST00000561253 MAP1LC3CQ9BXW4 147 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 PLAC8Q9NZF1 115 aa3.7□□□□□ -1.82
LRRC28-220ENST00000561253 H0Y8G0 127 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 IGKCP01834 107 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 KRTAP1-4P0C5Y4 121 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 C6orf226Q5I0X4 101 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 TMEM170BQ5T4T1 132 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 TOMM7Q9P0U1 55 aa3.69□□□□□ -1.82
LRRC28-220ENST00000561253 DMBT1Q9UGM3 2413 aaPredicted RBP3.68□□□□□ -1.82
LRRC28-220ENST00000561253 LOC107984640A0A0U1RRK4 108 aa3.68□□□□□ -1.82
LRRC28-220ENST00000561253 A0A1W2PNN7 141 aa3.68□□□□□ -1.82
LRRC28-220ENST00000561253 A8MU10 97 aa3.68□□□□□ -1.82
LRRC28-220ENST00000561253 NDUFC2-KCTD14E9PQ53 114 aa3.68□□□□□ -1.82
LRRC28-220ENST00000561253 CEND1Q8N111 149 aa3.68□□□□□ -1.82
LRRC28-220ENST00000561253 IGKV2D-26A0A0A0MRZ7 120 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 IGKV2-24A0A0C4DH68 120 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 LEPROTO15243 131 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 KRTDAPP60985 99 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 CKS1BP61024 79 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 Q8NDZ9 215 aa3.67□□□□□ -1.82
LRRC28-220ENST00000561253 J3QQQ9 107 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 S100A6P06703 90 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 MAJINQ3KP22 176 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 KRTAP11-1Q8IUC1 163 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 PLEKHB2Q96CS7 222 aa3.66□□□□□ -1.82
LRRC28-220ENST00000561253 LINC00474Q9P2X8 69 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms