RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 COX17Q14061 63 aa5.99□□□□□ -1.45
LDLR-214ENST00000560628 TMEM126AQ9H061 195 aa5.99□□□□□ -1.45
LDLR-214ENST00000560628 NDUFA5Q16718 116 aa5.98□□□□□ -1.45
LDLR-214ENST00000560628 SVBPQ8N300 66 aa5.98□□□□□ -1.45
LDLR-214ENST00000560628 TMEM223A0PJW6 202 aa5.97□□□□□ -1.45
LDLR-214ENST00000560628 M0R378 163 aa5.97□□□□□ -1.45
LDLR-214ENST00000560628 IFI27L1Q96BM0 104 aa5.97□□□□□ -1.45
LDLR-214ENST00000560628 IGKV2D-26A0A0A0MRZ7 120 aa5.96□□□□□ -1.46
LDLR-214ENST00000560628 FAM229BQ4G0N7 80 aa5.96□□□□□ -1.46
LDLR-214ENST00000560628 CBLN2Q8IUK8 224 aa5.96□□□□□ -1.46
LDLR-214ENST00000560628 YPEL4Q96NS1 127 aa5.96□□□□□ -1.46
LDLR-214ENST00000560628 RETNLBQ9BQ08 111 aa5.96□□□□□ -1.46
LDLR-214ENST00000560628 TRAV12-1A0A0B4J245 112 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 ATP6V1G1O75348 118 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 SMIM13P0DJ93 91 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 SFTA2Q6UW10 78 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 FAM19A2Q8N3H0 131 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 LINC00304Q8N9R0 145 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 CHCHD1Q96BP2 118 aaKnown RBP5.95□□□□□ -1.46
LDLR-214ENST00000560628 PLEKHB2Q96CS7 222 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 HIGD2AQ9BW72 106 aa5.95□□□□□ -1.46
LDLR-214ENST00000560628 H0Y8G0 127 aa5.93□□□□□ -1.46
LDLR-214ENST00000560628 MEIG1Q5JSS6 88 aa5.93□□□□□ -1.46
LDLR-214ENST00000560628 BOD1L2Q8IYS8 172 aa5.93□□□□□ -1.46
LDLR-214ENST00000560628 C3orf22Q8N5N4 141 aa5.93□□□□□ -1.46
LDLR-214ENST00000560628 NCR3O14931 201 aa5.92□□□□□ -1.46
LDLR-214ENST00000560628 HSBP1O75506 76 aa5.92□□□□□ -1.46
LDLR-214ENST00000560628 MIR7-3HGQ8N6C7 128 aa5.92□□□□□ -1.46
LDLR-214ENST00000560628 NDUFA12Q9UI09 145 aa5.91□□□□□ -1.46
LDLR-214ENST00000560628 TMEM238LA0A1B0GVL6 79 aa5.9□□□□□ -1.46
LDLR-214ENST00000560628 TRGC2P03986 189 aa5.9□□□□□ -1.46
LDLR-214ENST00000560628 HERV-K104P63124 156 aa5.9□□□□□ -1.46
LDLR-214ENST00000560628 SPRR4Q96PI1 79 aa5.9□□□□□ -1.46
LDLR-214ENST00000560628 IGLV7-46A0A075B6I9 117 aa5.89□□□□□ -1.47
LDLR-214ENST00000560628 MYMXA0A1B0GTQ4 84 aa5.89□□□□□ -1.47
LDLR-214ENST00000560628 SMCR5Q8TEV8 140 aa5.89□□□□□ -1.47
LDLR-214ENST00000560628 A6NJY4 79 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 LINC00587B1AMM8 73 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 PRYO14603 147 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 SERF1AO75920 110 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 LEPROTL1O95214 131 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 TSPEAR-AS2P59090 65 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 DAND5Q8N907 189 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 PPDPFQ9H3Y8 114 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 KCNQ1DNQ9H478 68 aa5.88□□□□□ -1.47
LDLR-214ENST00000560628 TRBV10-3A0A0K0K1G6 114 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 ETDCA0A1B0GVM5 59 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 LEPROTO15243 131 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 FABP4P15090 132 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 LINC00310P59036 64 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 PMCHL2Q9BQD1 86 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 MAP1LC3CQ9BXW4 147 aa5.87□□□□□ -1.47
LDLR-214ENST00000560628 SPRR1AP35321 89 aa5.86□□□□□ -1.47
LDLR-214ENST00000560628 C4orf48Q5BLP8 95 aa5.86□□□□□ -1.47
LDLR-214ENST00000560628 LINC00337Q8N6G1 96 aa5.86□□□□□ -1.47
LDLR-214ENST00000560628 CDIP1Q9H305 208 aa5.86□□□□□ -1.47
LDLR-214ENST00000560628 ZNF706Q9Y5V0 76 aaPredicted RBP5.86□□□□□ -1.47
LDLR-214ENST00000560628 KRTAP4-16G5E9R7 235 aaPredicted RBP5.85□□□□□ -1.47
LDLR-214ENST00000560628 SPAG11AQ6PDA7 123 aa5.85□□□□□ -1.47
LDLR-214ENST00000560628 MUC2Q02817 5179 aa5.85□□□□□ -1.47
LDLR-214ENST00000560628 J3QQQ9 107 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 DPM2O94777 84 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 PLNP26678 52 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 CTAG1AP78358 180 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 TPRXLQ17RH7 258 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 GAGE2AQ6NT46 116 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 SLC7A5P1Q8MH63 180 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 Q8NBF4 154 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 HSPB8Q9UJY1 196 aa5.84□□□□□ -1.47
LDLR-214ENST00000560628 A0A0U1RQV1 116 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 B5MCH6 92 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 ERC2-IT1O76042 136 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 LGALS3P17931 250 aaKnown RBP5.83□□□□□ -1.48
LDLR-214ENST00000560628 DDTP30046 118 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 HERVK_113P61574 105 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 S100A12P80511 92 aa5.83□□□□□ -1.48
LDLR-214ENST00000560628 LOC107984156A0A0G2JMH3 177 aa5.82□□□□□ -1.48
LDLR-214ENST00000560628 COLCA2A8K830 154 aa5.82□□□□□ -1.48
LDLR-214ENST00000560628 IGKCP01834 107 aa5.82□□□□□ -1.48
LDLR-214ENST00000560628 ARL17AQ8IVW1 177 aa5.82□□□□□ -1.48
LDLR-214ENST00000560628 TRBV10-2A0A0K0K1G8 114 aa5.81□□□□□ -1.48
LDLR-214ENST00000560628 NPC2P61916 151 aa5.81□□□□□ -1.48
LDLR-214ENST00000560628 MIEN1Q9BRT3 115 aa5.81□□□□□ -1.48
LDLR-214ENST00000560628 IGLV9-49A0A0B4J1Y8 123 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 EIF4EBP3O60516 100 aaPredicted RBP5.8□□□□□ -1.48
LDLR-214ENST00000560628 NMUP48645 174 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 LINC00483Q53H64 154 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 S100A7L2Q5SY68 101 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 ADAMTSL4-AS1Q5T5F5 129 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 SOSTDC1Q6X4U4 206 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 Q9BRP9 147 aa5.8□□□□□ -1.48
LDLR-214ENST00000560628 SPANXB1Q9NS25 103 aaPredicted RBP5.8□□□□□ -1.48
LDLR-214ENST00000560628 MOBPQ13875 183 aa5.79□□□□□ -1.48
LDLR-214ENST00000560628 A0A0J9YXY3 114 aa5.78□□□□□ -1.48
LDLR-214ENST00000560628 NDUFC2O95298 119 aa5.78□□□□□ -1.48
LDLR-214ENST00000560628 SPINK1P00995 79 aa5.78□□□□□ -1.48
LDLR-214ENST00000560628 IGLV6-57P01721 117 aa5.78□□□□□ -1.48
LDLR-214ENST00000560628 Q6ZRX8 168 aa5.78□□□□□ -1.48
LDLR-214ENST00000560628 FP248Q71RG6 208 aaPredicted RBP5.78□□□□□ -1.48
LDLR-214ENST00000560628 E9PLD3 99 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms