RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SMIM13P0DJ93 91 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 PTTG1IPP53801 180 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 RPL24P83731 157 aaKnown RBP7.67□□□□□ -1.18
LDLR-212ENST00000560467 HSD52Q0P140 79 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 SPANXB1Q9NS25 103 aaPredicted RBP7.67□□□□□ -1.18
LDLR-212ENST00000560467 FAM30AQ9NZY2 134 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 LRCOL1A6NCL2 159 aa7.66□□□□□ -1.18
LDLR-212ENST00000560467 Q8N814 137 aa7.66□□□□□ -1.18
LDLR-212ENST00000560467 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.65□□□□□ -1.18
LDLR-212ENST00000560467 CNBPP62633 177 aaKnown RBP7.65□□□□□ -1.18
LDLR-212ENST00000560467 Q6ZRU5 148 aa7.65□□□□□ -1.18
LDLR-212ENST00000560467 SPANXDQ9BXN6 97 aa7.65□□□□□ -1.18
LDLR-212ENST00000560467 SPANXCQ9NY87 97 aa7.65□□□□□ -1.18
LDLR-212ENST00000560467 HMCN2Q8NDA2 5059 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 LOC107984640A0A0U1RRK4 108 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 NDUFC2-KCTD14E9PQ53 114 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 COL5A1-AS1Q5SY13 56 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 C10orf25Q5T742 122 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 C2orf91Q6ZV80 131 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 MIR7-3HGQ8N6C7 128 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 SNHG12Q9BXW3 62 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 C6orf48Q9UBA6 75 aa7.64□□□□□ -1.19
LDLR-212ENST00000560467 A6NDN8 102 aa7.63□□□□□ -1.19
LDLR-212ENST00000560467 CEND1Q8N111 149 aa7.63□□□□□ -1.19
LDLR-212ENST00000560467 TP73-AS1Q9UF72 201 aa7.63□□□□□ -1.19
LDLR-212ENST00000560467 RPL18AQ02543 176 aaKnown RBP7.62□□□□□ -1.19
LDLR-212ENST00000560467 C9orf116Q5BN46 136 aaPredicted RBP7.62□□□□□ -1.19
LDLR-212ENST00000560467 MUSTN1Q8IVN3 82 aa7.62□□□□□ -1.19
LDLR-212ENST00000560467 LINC00474Q9P2X8 69 aa7.62□□□□□ -1.19
LDLR-212ENST00000560467 LRP1Q07954 4544 aaKnown RBP7.61□□□□□ -1.19
LDLR-212ENST00000560467 KRTAP29-1A8MX34 341 aaPredicted RBP7.61□□□□□ -1.19
LDLR-212ENST00000560467 WFDC2Q14508 124 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 BATFQ16520 125 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 ADAMTSL4-AS1Q5T5F5 129 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 LINC00528Q8N1L1 170 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 DAND5Q8N907 189 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 LINC00308Q8TCZ7 52 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 DPH3Q96FX2 82 aa7.61□□□□□ -1.19
LDLR-212ENST00000560467 A0A1B0GV90 55 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 PLA2G1BP04054 148 aaKnown RBP7.6□□□□□ -1.19
LDLR-212ENST00000560467 TLX1NBP0CAT3 122 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 HINT1P49773 126 aaPredicted RBP7.6□□□□□ -1.19
LDLR-212ENST00000560467 NPC2P61916 151 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 GAGE2EQ4V326 116 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 LITAFQ99732 161 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 PPDPFQ9H3Y8 114 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 GAGE2DQ9UEU5 116 aa7.6□□□□□ -1.19
LDLR-212ENST00000560467 UBR4Q5T4S7 5183 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 GAGE2BQ13066 116 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 Q6ZSA8 131 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 C9orf163Q8N9P6 203 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 RAB37Q96AX2 223 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 SND1-IT1Q9HBX3 110 aa7.59□□□□□ -1.19
LDLR-212ENST00000560467 SLPIP03973 132 aa7.58□□□□□ -1.2
LDLR-212ENST00000560467 BVES-AS1Q5T3Y7 98 aa7.57□□□□□ -1.2
LDLR-212ENST00000560467 TRAV13-2A0A0B4J235 113 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 A4D1N5 150 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 NDUFC2O95298 119 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 LINC01620Q4KN68 170 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 Q6ZRP5 223 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 XAGE1AQ9HD64 81 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 CBY1Q9Y3M2 126 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 FAT3Q8TDW7 4589 aa7.56□□□□□ -1.2
LDLR-212ENST00000560467 LOC107984156A0A0G2JMH3 177 aa7.55□□□□□ -1.2
LDLR-212ENST00000560467 ARL17AQ8IVW1 177 aa7.55□□□□□ -1.2
LDLR-212ENST00000560467 NKAPP1Q8N9T2 125 aa7.55□□□□□ -1.2
LDLR-212ENST00000560467 NHP2Q9NX24 153 aaKnown RBP7.55□□□□□ -1.2
LDLR-212ENST00000560467 IGKV2-24A0A0C4DH68 120 aa7.54□□□□□ -1.2
LDLR-212ENST00000560467 KRTAP10-4P60372 401 aaPredicted RBP7.54□□□□□ -1.2
LDLR-212ENST00000560467 S100A7L2Q5SY68 101 aa7.54□□□□□ -1.2
LDLR-212ENST00000560467 SCXQ7RTU7 201 aa7.54□□□□□ -1.2
LDLR-212ENST00000560467 OR13C6PQ8NH95 151 aa7.54□□□□□ -1.2
LDLR-212ENST00000560467 FXYD2P54710 66 aa7.53□□□□□ -1.2
LDLR-212ENST00000560467 SERTAD4-AS1Q5TG53 156 aa7.53□□□□□ -1.2
LDLR-212ENST00000560467 PRO1854Q9UHT4 67 aa7.53□□□□□ -1.2
LDLR-212ENST00000560467 TRBV10-2A0A0K0K1G8 114 aa7.52□□□□□ -1.21
LDLR-212ENST00000560467 Q1RN00 199 aa7.52□□□□□ -1.21
LDLR-212ENST00000560467 SDIM1Q6ZPB5 146 aa7.52□□□□□ -1.21
LDLR-212ENST00000560467 A0A0B4J2C4 111 aa7.51□□□□□ -1.21
LDLR-212ENST00000560467 M0R378 163 aa7.51□□□□□ -1.21
LDLR-212ENST00000560467 SOSTDC1Q6X4U4 206 aa7.51□□□□□ -1.21
LDLR-212ENST00000560467 TMEM126AQ9H061 195 aa7.51□□□□□ -1.21
LDLR-212ENST00000560467 PLA2G2DQ9UNK4 145 aa7.51□□□□□ -1.21
LDLR-212ENST00000560467 A0A096LNI7 61 aa7.5□□□□□ -1.21
LDLR-212ENST00000560467 CFC1BP0CG36 223 aa7.5□□□□□ -1.21
LDLR-212ENST00000560467 CFC1P0CG37 223 aa7.5□□□□□ -1.21
LDLR-212ENST00000560467 NCR3O14931 201 aa7.49□□□□□ -1.21
LDLR-212ENST00000560467 C9orf129Q5T035 196 aaKnown RBP7.49□□□□□ -1.21
LDLR-212ENST00000560467 H7C2G1 150 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 OXTP01178 125 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 COX6CP09669 75 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 PSMB2P49721 201 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 VAMP3Q15836 100 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 FAM19A5Q7Z5A7 132 aaPredicted RBP7.48□□□□□ -1.21
LDLR-212ENST00000560467 CIRBP-AS1Q8TBR5 109 aa7.48□□□□□ -1.21
LDLR-212ENST00000560467 A0A1B0GWB2 263 aa7.47□□□□□ -1.21
LDLR-212ENST00000560467 EIF4EBP3O60516 100 aaPredicted RBP7.47□□□□□ -1.21
LDLR-212ENST00000560467 RPL13AP40429 203 aaKnown RBP7.47□□□□□ -1.21
LDLR-212ENST00000560467 K7ERJ3 54 aa7.46□□□□□ -1.22
LDLR-212ENST00000560467 SNCGO76070 127 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms