RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CRYGAP11844 174 aa10.37□□□□□ -0.75
HDDC3-205ENST00000559898 IFI27L1Q96BM0 104 aa10.37□□□□□ -0.75
HDDC3-205ENST00000559898 NDUFA5Q16718 116 aa10.36□□□□□ -0.75
HDDC3-205ENST00000559898 FAM19A1Q7Z5A9 133 aa10.36□□□□□ -0.75
HDDC3-205ENST00000559898 LINC00158P58513 81 aa10.35□□□□□ -0.75
HDDC3-205ENST00000559898 LINC00310P59036 64 aa10.35□□□□□ -0.75
HDDC3-205ENST00000559898 COX17Q14061 63 aa10.35□□□□□ -0.75
HDDC3-205ENST00000559898 CHCHD1Q96BP2 118 aaKnown RBP10.35□□□□□ -0.75
HDDC3-205ENST00000559898 TRAV12-1A0A0B4J245 112 aa10.34□□□□□ -0.75
HDDC3-205ENST00000559898 SMIM13P0DJ93 91 aa10.34□□□□□ -0.75
HDDC3-205ENST00000559898 RETNLBQ9BQ08 111 aa10.33□□□□□ -0.76
HDDC3-205ENST00000559898 H0Y8G0 127 aa10.31□□□□□ -0.76
HDDC3-205ENST00000559898 TRGC2P03986 189 aa10.31□□□□□ -0.76
HDDC3-205ENST00000559898 TSPEAR-AS2P59090 65 aa10.31□□□□□ -0.76
HDDC3-205ENST00000559898 RPL24P83731 157 aaKnown RBP10.31□□□□□ -0.76
HDDC3-205ENST00000559898 C3orf22Q8N5N4 141 aa10.3□□□□□ -0.76
HDDC3-205ENST00000559898 MUC2Q02817 5179 aa10.29□□□□□ -0.76
HDDC3-205ENST00000559898 PLEKHB2Q96CS7 222 aa10.29□□□□□ -0.76
HDDC3-205ENST00000559898 NCR3O14931 201 aa10.28□□□□□ -0.76
HDDC3-205ENST00000559898 FAM229BQ4G0N7 80 aa10.28□□□□□ -0.76
HDDC3-205ENST00000559898 SLC7A5P1Q8MH63 180 aa10.28□□□□□ -0.76
HDDC3-205ENST00000559898 MIR7-3HGQ8N6C7 128 aa10.28□□□□□ -0.76
HDDC3-205ENST00000559898 HSBP1O75506 76 aa10.27□□□□□ -0.77
HDDC3-205ENST00000559898 SERF1AO75920 110 aa10.27□□□□□ -0.77
HDDC3-205ENST00000559898 HIGD2AQ9BW72 106 aa10.27□□□□□ -0.77
HDDC3-205ENST00000559898 MEIG1Q5JSS6 88 aa10.26□□□□□ -0.77
HDDC3-205ENST00000559898 SFTA2Q6UW10 78 aa10.25□□□□□ -0.77
HDDC3-205ENST00000559898 BOD1L2Q8IYS8 172 aa10.25□□□□□ -0.77
HDDC3-205ENST00000559898 DAND5Q8N907 189 aa10.25□□□□□ -0.77
HDDC3-205ENST00000559898 LINC00304Q8N9R0 145 aa10.25□□□□□ -0.77
HDDC3-205ENST00000559898 PMCHL2Q9BQD1 86 aa10.25□□□□□ -0.77
HDDC3-205ENST00000559898 NDUFA12Q9UI09 145 aa10.24□□□□□ -0.77
HDDC3-205ENST00000559898 IGKV2D-26A0A0A0MRZ7 120 aa10.22□□□□□ -0.77
HDDC3-205ENST00000559898 FABP4P15090 132 aa10.22□□□□□ -0.77
HDDC3-205ENST00000559898 SPRR4Q96PI1 79 aa10.22□□□□□ -0.77
HDDC3-205ENST00000559898 LEPROTL1O95214 131 aa10.21□□□□□ -0.77
HDDC3-205ENST00000559898 TRBV10-3A0A0K0K1G6 114 aa10.2□□□□□ -0.78
HDDC3-205ENST00000559898 COLCA2A8K830 154 aa10.2□□□□□ -0.78
HDDC3-205ENST00000559898 KRTAP4-16G5E9R7 235 aaPredicted RBP10.2□□□□□ -0.78
HDDC3-205ENST00000559898 MUC17Q685J3 4493 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 PRYO14603 147 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 LEPROTO15243 131 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 ATP6V1G1O75348 118 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 SPRR1AP35321 89 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 HERV-K104P63124 156 aa10.19□□□□□ -0.78
HDDC3-205ENST00000559898 MYMXA0A1B0GTQ4 84 aa10.18□□□□□ -0.78
HDDC3-205ENST00000559898 SMCR5Q8TEV8 140 aa10.18□□□□□ -0.78
HDDC3-205ENST00000559898 PPDPFQ9H3Y8 114 aa10.18□□□□□ -0.78
HDDC3-205ENST00000559898 KCNQ1DNQ9H478 68 aa10.18□□□□□ -0.78
HDDC3-205ENST00000559898 EIF4EBP3O60516 100 aaPredicted RBP10.17□□□□□ -0.78
HDDC3-205ENST00000559898 J3QQQ9 107 aa10.15□□□□□ -0.78
HDDC3-205ENST00000559898 ERC2-IT1O76042 136 aa10.15□□□□□ -0.78
HDDC3-205ENST00000559898 LINC00337Q8N6G1 96 aa10.15□□□□□ -0.78
HDDC3-205ENST00000559898 SOSTDC1Q6X4U4 206 aa10.14□□□□□ -0.79
HDDC3-205ENST00000559898 DPM2O94777 84 aa10.13□□□□□ -0.79
HDDC3-205ENST00000559898 LOC107984156A0A0G2JMH3 177 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 ETDCA0A1B0GVM5 59 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 B5MCH6 92 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 IGKCP01834 107 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 PLNP26678 52 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 NPC2P61916 151 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 ARL17AQ8IVW1 177 aa10.12□□□□□ -0.79
HDDC3-205ENST00000559898 IGLV7-46A0A075B6I9 117 aa10.11□□□□□ -0.79
HDDC3-205ENST00000559898 ADAMTSL4-AS1Q5T5F5 129 aa10.11□□□□□ -0.79
HDDC3-205ENST00000559898 Q9BRP9 147 aa10.11□□□□□ -0.79
HDDC3-205ENST00000559898 HSPB8Q9UJY1 196 aa10.11□□□□□ -0.79
HDDC3-205ENST00000559898 Q8NBF4 154 aa10.1□□□□□ -0.79
HDDC3-205ENST00000559898 MAP1LC3CQ9BXW4 147 aa10.1□□□□□ -0.79
HDDC3-205ENST00000559898 LINC00587B1AMM8 73 aa10.09□□□□□ -0.79
HDDC3-205ENST00000559898 LGALS3P17931 250 aaKnown RBP10.09□□□□□ -0.79
HDDC3-205ENST00000559898 DDTP30046 118 aa10.09□□□□□ -0.79
HDDC3-205ENST00000559898 GAGE2AQ6NT46 116 aa10.08□□□□□ -0.8
HDDC3-205ENST00000559898 A0A0J9YXY3 114 aa10.07□□□□□ -0.8
HDDC3-205ENST00000559898 TPRXLQ17RH7 258 aa10.07□□□□□ -0.8
HDDC3-205ENST00000559898 LINC00483Q53H64 154 aa10.07□□□□□ -0.8
HDDC3-205ENST00000559898 ZNF706Q9Y5V0 76 aaPredicted RBP10.07□□□□□ -0.8
HDDC3-205ENST00000559898 HERVK_113P61574 105 aa10.06□□□□□ -0.8
HDDC3-205ENST00000559898 TRBV10-2A0A0K0K1G8 114 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BKO60814 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 IGLV6-57P01721 117 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BJP06899 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BOP23527 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BBP33778 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 NMUP48645 174 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BDP58876 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BCP62807 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST2H2BEQ16778 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BHQ93079 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BNQ99877 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 HIST1H2BMQ99879 126 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 CDIP1Q9H305 208 aa10.05□□□□□ -0.8
HDDC3-205ENST00000559898 E9PLD3 99 aa10.04□□□□□ -0.8
HDDC3-205ENST00000559898 SPANXB1Q9NS25 103 aaPredicted RBP10.04□□□□□ -0.8
HDDC3-205ENST00000559898 FAT4Q6V0I7 4981 aa10.04□□□□□ -0.8
HDDC3-205ENST00000559898 IGLV9-49A0A0B4J1Y8 123 aa10.03□□□□□ -0.8
HDDC3-205ENST00000559898 SYS1-DBNDD2H3BUS1 97 aa10.03□□□□□ -0.8
HDDC3-205ENST00000559898 MOBPQ13875 183 aa10.03□□□□□ -0.8
HDDC3-205ENST00000559898 LITAFQ99732 161 aa10.03□□□□□ -0.8
HDDC3-205ENST00000559898 TTTY13Q9BZ97 58 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms