RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 Q0VG73 95 aa-1.75□□□□□ -2.69
VPS13C-205ENST00000558088 SACSQ9NZJ4 4579 aa-1.75□□□□□ -2.69
VPS13C-205ENST00000558088 MYO9AB2RTY4 2548 aa-1.75□□□□□ -2.69
VPS13C-205ENST00000558088 SAA2P0DJI9 122 aaPredicted RBP-1.76□□□□□ -2.69
VPS13C-205ENST00000558088 VAMP8Q9BV40 100 aa-1.76□□□□□ -2.69
VPS13C-205ENST00000558088 MYOM1P52179 1685 aa-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 FRYQ5TBA9 3013 aa-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 XRN1Q8IZH2 1706 aaKnown RBP-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 DEFB107AQ8IZN7 70 aa-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 LINC00846Q9NV44 126 aa-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 PSENENQ9NZ42 101 aa-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 SMG6Q86US8 1419 aaKnown RBP-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 MARF1Q9Y4F3 1742 aaKnown RBP-1.77□□□□□ -2.69
VPS13C-205ENST00000558088 ZFHX3Q15911 3703 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 A0A0G2JND7 137 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 H3BQF6 201 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 GNG7O60262 68 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 MT1HL1P0DM35 61 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 DEFB1P60022 68 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 UBE2L3P68036 154 aaKnown RBP-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 PRO1854Q9UHT4 67 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 CLIP1P30622 1438 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 GRIN2AQ12879 1464 aa-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 COL14A1Q05707 1796 aaKnown RBP-1.78□□□□□ -2.69
VPS13C-205ENST00000558088 CICQ96RK0 1608 aaPredicted RBP-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 ARHGEF5Q12774 1597 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 ADGRL2O95490 1459 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 UBE2L5PA0A1B0GUS4 154 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 C7orf77A4D0Y5 90 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 ARMS2P0C7Q2 107 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 HSD52Q0P140 79 aa-1.79□□□□□ -2.7
VPS13C-205ENST00000558088 EHBP1L1Q8N3D4 1523 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 TRBV7-7A0A0K0K1E9 115 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 OOSP1A8MZH6 123 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 H0YAA0 97 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 FGF7P21781 194 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 KNDC1Q76NI1 1749 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 CHD7Q9P2D1 2997 aa-1.8□□□□□ -2.7
VPS13C-205ENST00000558088 FAM24AA6NFZ4 105 aa-1.81□□□□□ -2.7
VPS13C-205ENST00000558088 ACACBO00763 2458 aa-1.81□□□□□ -2.7
VPS13C-205ENST00000558088 MYH7P12883 1935 aa-1.81□□□□□ -2.7
VPS13C-205ENST00000558088 TCHHQ07283 1943 aa-1.81□□□□□ -2.7
VPS13C-205ENST00000558088 CRYM-AS1A6NIL9 109 aa-1.82□□□□□ -2.7
VPS13C-205ENST00000558088 H0Y9P7 68 aa-1.82□□□□□ -2.7
VPS13C-205ENST00000558088 SELENOWP63302 87 aa-1.82□□□□□ -2.7
VPS13C-205ENST00000558088 ZNF436-AS1Q8NC38 126 aaPredicted RBP-1.82□□□□□ -2.7
VPS13C-205ENST00000558088 TRIOO75962 3097 aa-1.82□□□□□ -2.7
VPS13C-205ENST00000558088 NAP1L6A6NFF2 107 aa-1.83□□□□□ -2.7
VPS13C-205ENST00000558088 PP6455Q8WZ26 134 aa-1.83□□□□□ -2.7
VPS13C-205ENST00000558088 LINC00470Q9BZP3 86 aa-1.83□□□□□ -2.7
VPS13C-205ENST00000558088 S4R3F8 94 aa-1.83□□□□□ -2.7
VPS13C-205ENST00000558088 C5orf42Q9H799 3197 aa-1.83□□□□□ -2.7
VPS13C-205ENST00000558088 PDCD11Q14690 1871 aaKnown RBP-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 KTN1Q86UP2 1357 aaKnown RBP-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 DEFB110Q30KQ9 67 aa-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 NMSQ5H8A3 153 aa-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 DPH3P1Q9H4G8 78 aa-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 NAIPQ13075 1403 aa-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 EDC4Q6P2E9 1401 aaKnown RBP-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 ITPR2Q14571 2701 aa-1.84□□□□□ -2.7
VPS13C-205ENST00000558088 LRBAP50851 2863 aa-1.85□□□□□ -2.71
VPS13C-205ENST00000558088 AKAIN1P0CW23 69 aa-1.85□□□□□ -2.71
VPS13C-205ENST00000558088 MT1XP80297 61 aa-1.85□□□□□ -2.71
VPS13C-205ENST00000558088 NCOA3Q9Y6Q9 1424 aa-1.85□□□□□ -2.71
VPS13C-205ENST00000558088 SCN7AQ01118 1682 aa-1.86□□□□□ -2.71
VPS13C-205ENST00000558088 TMEM262E9PQX1 116 aa-1.86□□□□□ -2.71
VPS13C-205ENST00000558088 K7EP13 123 aa-1.86□□□□□ -2.71
VPS13C-205ENST00000558088 ASIPP42127 132 aa-1.86□□□□□ -2.71
VPS13C-205ENST00000558088 SRCAPQ6ZRS2 3230 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 TLN1Q9Y490 2541 aaKnown RBP-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 SNAPC5O75971 98 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 ATP5EP56381 51 aaPredicted RBP-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 SCAPERQ9BY12 1400 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 PAIP2BQ9ULR5 123 aaKnown RBP-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 AP4S1Q9Y587 144 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 DNAH8Q96JB1 4490 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 TLN2Q9Y4G6 2542 aa-1.87□□□□□ -2.71
VPS13C-205ENST00000558088 EYSQ5T1H1 3165 aa-1.88□□□□□ -2.71
VPS13C-205ENST00000558088 NDUFA3O95167 84 aa-1.88□□□□□ -2.71
VPS13C-205ENST00000558088 QRICH2Q9H0J4 1663 aa-1.89□□□□□ -2.71
VPS13C-205ENST00000558088 H7BZZ5 65 aa-1.89□□□□□ -2.71
VPS13C-205ENST00000558088 LRRC37AA6NMS7 1700 aa-1.89□□□□□ -2.71
VPS13C-205ENST00000558088 NUP188Q5SRE5 1749 aa-1.89□□□□□ -2.71
VPS13C-205ENST00000558088 A2ML1A8K2U0 1454 aa-1.89□□□□□ -2.71
VPS13C-205ENST00000558088 ROBO1Q9Y6N7 1651 aa-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 TMEM218A2RU14 115 aa-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 PSMG4Q5JS54 123 aa-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 SVBPQ8N300 66 aa-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 CGREF1Q99674 301 aa-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 SPTAN1Q13813 2472 aaKnown RBP-1.9□□□□□ -2.71
VPS13C-205ENST00000558088 KRTDAPP60985 99 aa-1.91□□□□□ -2.72
VPS13C-205ENST00000558088 C1orf54Q8WWF1 131 aa-1.91□□□□□ -2.72
VPS13C-205ENST00000558088 ANKRD36A6QL64 1941 aa-1.91□□□□□ -2.72
VPS13C-205ENST00000558088 TOP2BQ02880 1626 aa-1.92□□□□□ -2.72
VPS13C-205ENST00000558088 CSMD1Q96PZ7 3565 aa-1.92□□□□□ -2.72
VPS13C-205ENST00000558088 MBD5Q9P267 1494 aa-1.93□□□□□ -2.72
VPS13C-205ENST00000558088 CEP152O94986 1710 aa-1.93□□□□□ -2.72
VPS13C-205ENST00000558088 PMCHL1Q16048 86 aa-1.93□□□□□ -2.72
VPS13C-205ENST00000558088 CCDC58Q4VC31 144 aa-1.93□□□□□ -2.72
VPS13C-205ENST00000558088 ABCC5O15440 1437 aa-1.93□□□□□ -2.72
Retrieved 100 of 20,778 RNA–protein pairs in 261.4 ms