RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 LINC00242Q5T6M2 205 aa4.84□□□□□ -1.63
SPG11-205ENST00000558080 SDIM1Q6ZPB5 146 aa4.84□□□□□ -1.63
SPG11-205ENST00000558080 CCL25O15444 150 aa4.83□□□□□ -1.64
SPG11-205ENST00000558080 TSPEAR-AS2P59090 65 aa4.83□□□□□ -1.64
SPG11-205ENST00000558080 KRTAP10-4P60372 401 aaPredicted RBP4.83□□□□□ -1.64
SPG11-205ENST00000558080 RPL37AP61513 92 aaKnown RBP4.83□□□□□ -1.64
SPG11-205ENST00000558080 SCGB1D4Q6XE38 83 aa4.83□□□□□ -1.64
SPG11-205ENST00000558080 ORAOV1Q8WV07 137 aa4.83□□□□□ -1.64
SPG11-205ENST00000558080 DPH3Q96FX2 82 aa4.83□□□□□ -1.64
SPG11-205ENST00000558080 IGHV3-64A0A075B6Q5 118 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 A6NDN8 102 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 SPINK8P0C7L1 97 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 CNBPP62633 177 aaKnown RBP4.82□□□□□ -1.64
SPG11-205ENST00000558080 HIGD2BQ4VC39 106 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 C15orf56Q8N910 161 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 CHCHD10Q8WYQ3 142 aaPredicted RBP4.82□□□□□ -1.64
SPG11-205ENST00000558080 HIST1H4GQ99525 98 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 CDKN2A-AS1Q9UH64 79 aa4.82□□□□□ -1.64
SPG11-205ENST00000558080 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.81□□□□□ -1.64
SPG11-205ENST00000558080 CHTF8P0CG12 524 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 COX6A2Q02221 97 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 FOXI1Q12951 378 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 SS18Q15532 418 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 CFAP161Q6P656 301 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 CEND1Q8N111 149 aa4.81□□□□□ -1.64
SPG11-205ENST00000558080 SPANXB1Q9NS25 103 aaPredicted RBP4.81□□□□□ -1.64
SPG11-205ENST00000558080 IGLV5-39A0A0G2JS06 123 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 LINC00959A0A1B0GUT2 108 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 A0A1B0GV90 55 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 SMIM1B2RUZ4 78 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 TMEM238C9JI98 176 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 NDUFA12Q9UI09 145 aa4.8□□□□□ -1.64
SPG11-205ENST00000558080 LRP1Q07954 4544 aaKnown RBP4.8□□□□□ -1.64
SPG11-205ENST00000558080 A0A087WYN8 130 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 A0A0J9YXY3 114 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 NDUFA1O15239 70 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 XCL1P47992 114 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 SRSF9Q13242 221 aaKnown RBP eCLIP4.79□□□□□ -1.64
SPG11-205ENST00000558080 CIRBPQ14011 172 aaKnown RBP4.79□□□□□ -1.64
SPG11-205ENST00000558080 LINC01561Q8N1V8 128 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 LINC00526Q96FQ7 95 aa4.79□□□□□ -1.64
SPG11-205ENST00000558080 A0A087WZ39 114 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 IGHV3OR16-9A0A0B4J2B5 98 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 TAX1BP3O14907 124 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 TIMM17BO60830 172 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 OXTP01178 125 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 SMIM13P0DJ93 91 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 FXYD2P54710 66 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 HERV-K104P63124 156 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 Q6ZVH6 145 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 SPACA4Q8TDM5 124 aa4.78□□□□□ -1.64
SPG11-205ENST00000558080 PKHD1L1Q86WI1 4243 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 GVQW2A0A096LPI5 108 aaPredicted RBP4.77□□□□□ -1.65
SPG11-205ENST00000558080 IGKV2-24A0A0C4DH68 120 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 SFTA2Q6UW10 78 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 CD164L2Q6UWJ8 174 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 COX7B2Q8TF08 81 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 SPANXDQ9BXN6 97 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 SPANXCQ9NY87 97 aa4.77□□□□□ -1.65
SPG11-205ENST00000558080 A0A1B0GWB2 263 aa4.76□□□□□ -1.65
SPG11-205ENST00000558080 COX7A2LO14548 114 aa4.76□□□□□ -1.65
SPG11-205ENST00000558080 RPL24P83731 157 aaKnown RBP4.76□□□□□ -1.65
SPG11-205ENST00000558080 C5orf38Q86SI9 138 aa4.76□□□□□ -1.65
SPG11-205ENST00000558080 COPS9Q8WXC6 57 aa4.76□□□□□ -1.65
SPG11-205ENST00000558080 ZNF625Q96I27 306 aaPredicted RBP4.76□□□□□ -1.65
SPG11-205ENST00000558080 NHP2Q9NX24 153 aaKnown RBP4.76□□□□□ -1.65
SPG11-205ENST00000558080 PLAC8Q9NZF1 115 aa4.76□□□□□ -1.65
SPG11-205ENST00000558080 FAT3Q8TDW7 4589 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 A0A096LNI7 61 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 PRSS2P07478 247 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 IFITM1P13164 125 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 LCE1AQ5T7P2 110 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 LITAFQ99732 161 aa4.75□□□□□ -1.65
SPG11-205ENST00000558080 APOMO95445 188 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 MALP21145 153 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 CXCL5P42830 114 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 SYCNQ0VAF6 134 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 MEIG1Q5JSS6 88 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 Q8IZM0 81 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 C7orf33Q8WU49 177 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 RAB37Q96AX2 223 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 CARD19Q96LW7 228 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 TOMM7Q9P0U1 55 aa4.74□□□□□ -1.65
SPG11-205ENST00000558080 B5MCH6 92 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 K7ERJ3 54 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 VAMP3Q15836 100 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 C6orf226Q5I0X4 101 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 SERTAD4-AS1Q5TG53 156 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 Q6ZRU5 148 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 MUSTN1Q8IVN3 82 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 PPDPFQ9H3Y8 114 aa4.73□□□□□ -1.65
SPG11-205ENST00000558080 A0A0B4J2C4 111 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 A4D1N5 150 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 H3BUT2 72 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 GAGE2BQ13066 116 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 ADAMTSL4-AS1Q5T5F5 129 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 CAMK2N2Q96S95 79 aa4.72□□□□□ -1.65
SPG11-205ENST00000558080 LOC107984640A0A0U1RRK4 108 aa4.71□□□□□ -1.66
SPG11-205ENST00000558080 A0A1W2PPM0 123 aa4.71□□□□□ -1.66
SPG11-205ENST00000558080 CFC1BP0CG36 223 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms