RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 FAT4Q6V0I7 4981 aa6.34□□□□□ -1.39
SYNE2-227ENST00000557307 C3orf22Q8N5N4 141 aa6.33□□□□□ -1.4
SYNE2-227ENST00000557307 TMEM223A0PJW6 202 aa6.32□□□□□ -1.4
SYNE2-227ENST00000557307 CHTOPQ9Y3Y2 248 aaKnown RBP6.32□□□□□ -1.4
SYNE2-227ENST00000557307 LINC00310P59036 64 aa6.3□□□□□ -1.4
SYNE2-227ENST00000557307 FAM229BQ4G0N7 80 aa6.3□□□□□ -1.4
SYNE2-227ENST00000557307 LINC00304Q8N9R0 145 aa6.3□□□□□ -1.4
SYNE2-227ENST00000557307 NCR3O14931 201 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 SMIM13P0DJ93 91 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 TSPEAR-AS2P59090 65 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 COX17Q14061 63 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 CBLN2Q8IUK8 224 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 FAM19A2Q8N3H0 131 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 PLEKHB2Q96CS7 222 aa6.29□□□□□ -1.4
SYNE2-227ENST00000557307 TRAV12-1A0A0B4J245 112 aa6.28□□□□□ -1.4
SYNE2-227ENST00000557307 SNAPINO95295 136 aa6.28□□□□□ -1.4
SYNE2-227ENST00000557307 LINC00158P58513 81 aa6.28□□□□□ -1.4
SYNE2-227ENST00000557307 RPL24P83731 157 aaKnown RBP6.28□□□□□ -1.4
SYNE2-227ENST00000557307 IFI27L1Q96BM0 104 aa6.28□□□□□ -1.4
SYNE2-227ENST00000557307 HIGD2AQ9BW72 106 aa6.28□□□□□ -1.4
SYNE2-227ENST00000557307 SVBPQ8N300 66 aa6.27□□□□□ -1.41
SYNE2-227ENST00000557307 IGKV2D-26A0A0A0MRZ7 120 aa6.26□□□□□ -1.41
SYNE2-227ENST00000557307 MIR7-3HGQ8N6C7 128 aa6.26□□□□□ -1.41
SYNE2-227ENST00000557307 CHCHD1Q96BP2 118 aaKnown RBP6.26□□□□□ -1.41
SYNE2-227ENST00000557307 SPRR4Q96PI1 79 aa6.26□□□□□ -1.41
SYNE2-227ENST00000557307 KRTAP4-16G5E9R7 235 aaPredicted RBP6.25□□□□□ -1.41
SYNE2-227ENST00000557307 H0Y8G0 127 aa6.25□□□□□ -1.41
SYNE2-227ENST00000557307 BOD1L2Q8IYS8 172 aa6.25□□□□□ -1.41
SYNE2-227ENST00000557307 DAND5Q8N907 189 aa6.25□□□□□ -1.41
SYNE2-227ENST00000557307 MEIG1Q5JSS6 88 aa6.24□□□□□ -1.41
SYNE2-227ENST00000557307 TRBV10-3A0A0K0K1G6 114 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 TRGC2P03986 189 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 SPRR1AP35321 89 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 NDUFA5Q16718 116 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 LCE2AQ5TA79 106 aaPredicted RBP6.23□□□□□ -1.41
SYNE2-227ENST00000557307 SFTA2Q6UW10 78 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 SMCR5Q8TEV8 140 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 PMCHL2Q9BQD1 86 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 PPDPFQ9H3Y8 114 aa6.23□□□□□ -1.41
SYNE2-227ENST00000557307 PRYO14603 147 aa6.22□□□□□ -1.41
SYNE2-227ENST00000557307 HSBP1O75506 76 aa6.22□□□□□ -1.41
SYNE2-227ENST00000557307 SERF1AO75920 110 aa6.22□□□□□ -1.41
SYNE2-227ENST00000557307 NDUFA12Q9UI09 145 aa6.22□□□□□ -1.41
SYNE2-227ENST00000557307 IGLV7-46A0A075B6I9 117 aa6.21□□□□□ -1.42
SYNE2-227ENST00000557307 ERC2-IT1O76042 136 aa6.21□□□□□ -1.42
SYNE2-227ENST00000557307 TPRXLQ17RH7 258 aa6.21□□□□□ -1.42
SYNE2-227ENST00000557307 KCNQ1DNQ9H478 68 aa6.21□□□□□ -1.42
SYNE2-227ENST00000557307 EIF4EBP3O60516 100 aaPredicted RBP6.2□□□□□ -1.42
SYNE2-227ENST00000557307 LINC00337Q8N6G1 96 aa6.2□□□□□ -1.42
SYNE2-227ENST00000557307 Q8NBF4 154 aa6.2□□□□□ -1.42
SYNE2-227ENST00000557307 LEPROTO15243 131 aa6.19□□□□□ -1.42
SYNE2-227ENST00000557307 B5MCH6 92 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 LEPROTL1O95214 131 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 FABP4P15090 132 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 HERV-K104P63124 156 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 SOSTDC1Q6X4U4 206 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 Q9BRP9 147 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 CDIP1Q9H305 208 aa6.18□□□□□ -1.42
SYNE2-227ENST00000557307 MYMXA0A1B0GTQ4 84 aa6.17□□□□□ -1.42
SYNE2-227ENST00000557307 ETDCA0A1B0GVM5 59 aa6.17□□□□□ -1.42
SYNE2-227ENST00000557307 ATP6V1G1O75348 118 aa6.17□□□□□ -1.42
SYNE2-227ENST00000557307 NPC2P61916 151 aa6.17□□□□□ -1.42
SYNE2-227ENST00000557307 SLC7A5P1Q8MH63 180 aa6.17□□□□□ -1.42
SYNE2-227ENST00000557307 LOC107984156A0A0G2JMH3 177 aa6.16□□□□□ -1.42
SYNE2-227ENST00000557307 J3QQQ9 107 aa6.16□□□□□ -1.42
SYNE2-227ENST00000557307 LINC00483Q53H64 154 aa6.16□□□□□ -1.42
SYNE2-227ENST00000557307 ARL17AQ8IVW1 177 aa6.16□□□□□ -1.42
SYNE2-227ENST00000557307 KRTAP4-1Q9BYQ7 146 aa6.16□□□□□ -1.42
SYNE2-227ENST00000557307 COLCA2A8K830 154 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 DDTP30046 118 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 KRTAP13-3Q3SY46 172 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 ADAMTSL4-AS1Q5T5F5 129 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 GAGE2AQ6NT46 116 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 KRTAP9-2Q9BYQ4 174 aa6.15□□□□□ -1.42
SYNE2-227ENST00000557307 ZNF706Q9Y5V0 76 aaPredicted RBP6.15□□□□□ -1.42
SYNE2-227ENST00000557307 IGLV9-49A0A0B4J1Y8 123 aa6.14□□□□□ -1.43
SYNE2-227ENST00000557307 DPM2O94777 84 aa6.14□□□□□ -1.43
SYNE2-227ENST00000557307 MOBPQ13875 183 aa6.14□□□□□ -1.43
SYNE2-227ENST00000557307 IGKCP01834 107 aa6.13□□□□□ -1.43
SYNE2-227ENST00000557307 PLNP26678 52 aa6.13□□□□□ -1.43
SYNE2-227ENST00000557307 A0A0J9YXY3 114 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 A0A0U1RQV1 116 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 IGLV6-57P01721 117 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 CTAG1AP78358 180 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 SPAG11AQ6PDA7 123 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 Q6ZRX8 168 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 ST20-AS1Q8NBB2 130 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 MAP1LC3CQ9BXW4 147 aa6.12□□□□□ -1.43
SYNE2-227ENST00000557307 SPANXB1Q9NS25 103 aaPredicted RBP6.12□□□□□ -1.43
SYNE2-227ENST00000557307 TRBV10-2A0A0K0K1G8 114 aa6.11□□□□□ -1.43
SYNE2-227ENST00000557307 LGALS3P17931 250 aaKnown RBP6.11□□□□□ -1.43
SYNE2-227ENST00000557307 Q8N377 158 aa6.11□□□□□ -1.43
SYNE2-227ENST00000557307 LITAFQ99732 161 aa6.11□□□□□ -1.43
SYNE2-227ENST00000557307 HSPB8Q9UJY1 196 aa6.11□□□□□ -1.43
SYNE2-227ENST00000557307 TRAV23DV6A0A075B6W5 121 aa6.1□□□□□ -1.43
SYNE2-227ENST00000557307 LINC00587B1AMM8 73 aa6.1□□□□□ -1.43
SYNE2-227ENST00000557307 FP248Q71RG6 208 aaPredicted RBP6.1□□□□□ -1.43
SYNE2-227ENST00000557307 TTTY13Q9BZ97 58 aa6.1□□□□□ -1.43
SYNE2-227ENST00000557307 E9PLD3 99 aa6.09□□□□□ -1.43
SYNE2-227ENST00000557307 NDUFC2O95298 119 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms