RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PMCHL2	Q9BQD1	86 aa		7.54	□□□□□ -1.2
SHMT2-223	ENST00000556689	C6orf48	Q9UBA6	75 aa		7.54	□□□□□ -1.2
SHMT2-223	ENST00000556689	FAT4	Q6V0I7	4981 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	KRTAP9-6	A0A140TA67	174 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	C11orf86	A6NJI1	115 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	SMIM6	P0DI80	62 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	S100A12	P80511	92 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	JOSD1	Q15040	202 aa	Predicted RBP	7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	FAM104A	Q969W3	186 aa		7.53	□□□□□ -1.2
SHMT2-223	ENST00000556689	IGLV5-45	A0A087WSX0	123 aa		7.52	□□□□□ -1.21
SHMT2-223	ENST00000556689	LINC01561	Q8N1V8	128 aa		7.52	□□□□□ -1.21
SHMT2-223	ENST00000556689	VAMP8	Q9BV40	100 aa		7.52	□□□□□ -1.21
SHMT2-223	ENST00000556689	ZNF861P	O60384	105 aa		7.51	□□□□□ -1.21
SHMT2-223	ENST00000556689	ZNF22	P17026	224 aa	Predicted RBP	7.51	□□□□□ -1.21
SHMT2-223	ENST00000556689	SFTA2	Q6UW10	78 aa		7.51	□□□□□ -1.21
SHMT2-223	ENST00000556689	ATOH7	Q8N100	152 aa		7.51	□□□□□ -1.21
SHMT2-223	ENST00000556689	CDKN2A-AS1	Q9UH64	79 aa		7.51	□□□□□ -1.21
SHMT2-223	ENST00000556689	PLEKHB2	Q96CS7	222 aa		7.5	□□□□□ -1.21
SHMT2-223	ENST00000556689	TRBV30	A0A0K0K1B3	111 aa		7.49	□□□□□ -1.21
SHMT2-223	ENST00000556689	NDUFC2-KCTD14	E9PQ53	114 aa		7.49	□□□□□ -1.21
SHMT2-223	ENST00000556689	SPINK8	P0C7L1	97 aa		7.49	□□□□□ -1.21
SHMT2-223	ENST00000556689	LGALS3	P17931	250 aa	Known RBP	7.49	□□□□□ -1.21
SHMT2-223	ENST00000556689	KIAA0087	Q14695	138 aa		7.49	□□□□□ -1.21
SHMT2-223	ENST00000556689	LOC105371267	A0A1B0GV96	52 aa		7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	TMEM223	A0PJW6	202 aa		7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	CXCL5	P42830	114 aa		7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	CKS1B	P61024	79 aa		7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	C9orf129	Q5T035	196 aa	Known RBP	7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	TOMM7	Q9P0U1	55 aa		7.48	□□□□□ -1.21
SHMT2-223	ENST00000556689	SMIM1	B2RUZ4	78 aa		7.47	□□□□□ -1.21
SHMT2-223	ENST00000556689		E9PLD3	99 aa		7.47	□□□□□ -1.21
SHMT2-223	ENST00000556689	NMU	P48645	174 aa		7.47	□□□□□ -1.21
SHMT2-223	ENST00000556689	COX7B2	Q8TF08	81 aa		7.47	□□□□□ -1.21
SHMT2-223	ENST00000556689	LEPROT	O15243	131 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689	C6orf226	Q5I0X4	101 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689	PYY3	Q5JQD4	70 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689	C2orf82	Q6UX34	121 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689		Q8IZM0	81 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689	TYMSOS	Q8TAI1	123 aa		7.46	□□□□□ -1.22
SHMT2-223	ENST00000556689	CRYGA	P11844	174 aa		7.45	□□□□□ -1.22
SHMT2-223	ENST00000556689	SPATA45	Q537H7	98 aa		7.45	□□□□□ -1.22
SHMT2-223	ENST00000556689	LBH	Q53QV2	105 aa	Predicted RBP	7.45	□□□□□ -1.22
SHMT2-223	ENST00000556689	PAM16	Q9Y3D7	125 aa		7.45	□□□□□ -1.22
SHMT2-223	ENST00000556689	C22orf24	Q9Y442	160 aa		7.45	□□□□□ -1.22
SHMT2-223	ENST00000556689		A0A087X002	238 aa		7.44	□□□□□ -1.22
SHMT2-223	ENST00000556689	MYMX	A0A1B0GTQ4	84 aa		7.44	□□□□□ -1.22
SHMT2-223	ENST00000556689		J3QQQ9	107 aa		7.44	□□□□□ -1.22
SHMT2-223	ENST00000556689	IGLV5-39	A0A0G2JS06	123 aa		7.43	□□□□□ -1.22
SHMT2-223	ENST00000556689	LINC00587	B1AMM8	73 aa		7.43	□□□□□ -1.22
SHMT2-223	ENST00000556689	HERV-K104	P63124	156 aa		7.43	□□□□□ -1.22
SHMT2-223	ENST00000556689	ZNF815P	A8K554	130 aa		7.42	□□□□□ -1.22
SHMT2-223	ENST00000556689	RPL28	P46779	137 aa	Known RBP	7.42	□□□□□ -1.22
SHMT2-223	ENST00000556689	SCGB1D4	Q6XE38	83 aa		7.42	□□□□□ -1.22
SHMT2-223	ENST00000556689	NDUFA12	Q9UI09	145 aa		7.42	□□□□□ -1.22
SHMT2-223	ENST00000556689	C12orf57	Q99622	126 aa		7.41	□□□□□ -1.22
SHMT2-223	ENST00000556689	TSTD3	H0UI37	97 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	BCE1	O60756	84 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	ANKRD39	Q53RE8	183 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	MEIG1	Q5JSS6	88 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	CDIP1	Q9H305	208 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	XAGE1A	Q9HD64	81 aa		7.4	□□□□□ -1.22
SHMT2-223	ENST00000556689	MRPL55	Q7Z7F7	128 aa	Known RBP	7.39	□□□□□ -1.23
SHMT2-223	ENST00000556689	TP73-AS1	Q9UF72	201 aa		7.39	□□□□□ -1.23
SHMT2-223	ENST00000556689	MUC17	Q685J3	4493 aa		7.39	□□□□□ -1.23
SHMT2-223	ENST00000556689	TMEM238	C9JI98	176 aa		7.38	□□□□□ -1.23
SHMT2-223	ENST00000556689	SLC25A34	Q6PIV7	304 aa		7.38	□□□□□ -1.23
SHMT2-223	ENST00000556689	COPS9	Q8WXC6	57 aa		7.38	□□□□□ -1.23
SHMT2-223	ENST00000556689	RETNLB	Q9BQ08	111 aa		7.38	□□□□□ -1.23
SHMT2-223	ENST00000556689	ANAPC11	Q9NYG5	84 aa		7.38	□□□□□ -1.23
SHMT2-223	ENST00000556689	IGKV2D-26	A0A0A0MRZ7	120 aa		7.37	□□□□□ -1.23
SHMT2-223	ENST00000556689	COX8A	P10176	69 aa		7.37	□□□□□ -1.23
SHMT2-223	ENST00000556689	TPRXL	Q17RH7	258 aa		7.37	□□□□□ -1.23
SHMT2-223	ENST00000556689	TSPEAR-AS2	P59090	65 aa		7.36	□□□□□ -1.23
SHMT2-223	ENST00000556689	COX17	Q14061	63 aa		7.36	□□□□□ -1.23
SHMT2-223	ENST00000556689	KRTAP13-2	Q52LG2	175 aa		7.36	□□□□□ -1.23
SHMT2-223	ENST00000556689	MIEN1	Q9BRT3	115 aa		7.36	□□□□□ -1.23
SHMT2-223	ENST00000556689	UQCR10	Q9UDW1	63 aa		7.36	□□□□□ -1.23
SHMT2-223	ENST00000556689	IGLV7-46	A0A075B6I9	117 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	RPL37AP8	A6NKH3	93 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	DLEU1	O43261	78 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	LINC00304	Q8N9R0	145 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	ZNF625	Q96I27	306 aa	Predicted RBP	7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	LINC00167	Q96N53	147 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	ERG28	Q9UKR5	140 aa		7.35	□□□□□ -1.23
SHMT2-223	ENST00000556689	LINC00158	P58513	81 aa		7.34	□□□□□ -1.23
SHMT2-223	ENST00000556689	PCP2	Q8IVA1	136 aa		7.34	□□□□□ -1.23
SHMT2-223	ENST00000556689	BOD1L2	Q8IYS8	172 aa		7.34	□□□□□ -1.23
SHMT2-223	ENST00000556689	LINC00518	Q8N0U6	118 aa		7.34	□□□□□ -1.23
SHMT2-223	ENST00000556689	C14orf144	Q96I85	54 aa		7.34	□□□□□ -1.23
SHMT2-223	ENST00000556689		A0A0J9YXY3	114 aa		7.33	□□□□□ -1.24
SHMT2-223	ENST00000556689	TIMM17B	O60830	172 aa		7.33	□□□□□ -1.24
SHMT2-223	ENST00000556689	PFN2	P35080	140 aa		7.33	□□□□□ -1.24
SHMT2-223	ENST00000556689	CTAG1A	P78358	180 aa		7.33	□□□□□ -1.24
SHMT2-223	ENST00000556689	FAM229B	Q4G0N7	80 aa		7.33	□□□□□ -1.24
SHMT2-223	ENST00000556689	UBE2A	P49459	152 aa		7.32	□□□□□ -1.24
SHMT2-223	ENST00000556689	GAGE10	A6NGK3	116 aa		7.31	□□□□□ -1.24
SHMT2-223	ENST00000556689		Q6ZVH6	145 aa		7.31	□□□□□ -1.24
SHMT2-223	ENST00000556689	KRTAP13-1	Q8IUC0	172 aa		7.31	□□□□□ -1.24
SHMT2-223	ENST00000556689	TTTY13	Q9BZ97	58 aa		7.31	□□□□□ -1.24
SHMT2-223	ENST00000556689	PRO1933	Q9H354	126 aa		7.3	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms