RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 SMIM6P0DI80 62 aa12.44□□□□□ -0.42
VTI1B-205ENST00000555543 PYY3Q5JQD4 70 aa12.44□□□□□ -0.42
VTI1B-205ENST00000555543 PET117Q6UWS5 81 aa12.44□□□□□ -0.42
VTI1B-205ENST00000555543 MRPL55Q7Z7F7 128 aaKnown RBP12.44□□□□□ -0.42
VTI1B-205ENST00000555543 DIRC1Q969H9 104 aa12.44□□□□□ -0.42
VTI1B-205ENST00000555543 TMEM223A0PJW6 202 aa12.43□□□□□ -0.42
VTI1B-205ENST00000555543 H0Y9J4 135 aa12.43□□□□□ -0.42
VTI1B-205ENST00000555543 LBHQ53QV2 105 aaPredicted RBP12.43□□□□□ -0.42
VTI1B-205ENST00000555543 ZNF625Q96I27 306 aaPredicted RBP12.43□□□□□ -0.42
VTI1B-205ENST00000555543 ERG28Q9UKR5 140 aa12.43□□□□□ -0.42
VTI1B-205ENST00000555543 PLA2G2DQ9UNK4 145 aa12.43□□□□□ -0.42
VTI1B-205ENST00000555543 SCGB1D1O95968 90 aa12.42□□□□□ -0.42
VTI1B-205ENST00000555543 IGLV5-37A0A075B6J1 123 aa12.4□□□□□ -0.42
VTI1B-205ENST00000555543 C20orf202A1L168 122 aa12.4□□□□□ -0.42
VTI1B-205ENST00000555543 LINC00167Q96N53 147 aa12.4□□□□□ -0.42
VTI1B-205ENST00000555543 GAGE10A6NGK3 116 aa12.39□□□□□ -0.43
VTI1B-205ENST00000555543 H0Y8G0 127 aa12.39□□□□□ -0.43
VTI1B-205ENST00000555543 SND1-IT1Q9HBX3 110 aa12.39□□□□□ -0.43
VTI1B-205ENST00000555543 UBR4Q5T4S7 5183 aa12.39□□□□□ -0.43
VTI1B-205ENST00000555543 RPL37AP8A6NKH3 93 aa12.38□□□□□ -0.43
VTI1B-205ENST00000555543 LINC01545Q5VT33 79 aa12.38□□□□□ -0.43
VTI1B-205ENST00000555543 LINC00518Q8N0U6 118 aa12.38□□□□□ -0.43
VTI1B-205ENST00000555543 COX17Q14061 63 aa12.37□□□□□ -0.43
VTI1B-205ENST00000555543 SFTA2Q6UW10 78 aa12.37□□□□□ -0.43
VTI1B-205ENST00000555543 KRTAP1-4P0C5Y4 121 aa12.36□□□□□ -0.43
VTI1B-205ENST00000555543 NKAPP1Q8N9T2 125 aa12.36□□□□□ -0.43
VTI1B-205ENST00000555543 Q8NDZ9 215 aa12.35□□□□□ -0.43
VTI1B-205ENST00000555543 C12orf57Q99622 126 aa12.35□□□□□ -0.43
VTI1B-205ENST00000555543 ZNF861PO60384 105 aa12.34□□□□□ -0.43
VTI1B-205ENST00000555543 VPREB1P12018 145 aa12.34□□□□□ -0.43
VTI1B-205ENST00000555543 PRR26Q8N8Z3 221 aa12.34□□□□□ -0.43
VTI1B-205ENST00000555543 BCE1O60756 84 aa12.33□□□□□ -0.44
VTI1B-205ENST00000555543 A0A0U1RRA0 63 aa12.31□□□□□ -0.44
VTI1B-205ENST00000555543 LINC00158P58513 81 aa12.31□□□□□ -0.44
VTI1B-205ENST00000555543 PMCHL2Q9BQD1 86 aa12.31□□□□□ -0.44
VTI1B-205ENST00000555543 IGKV2-28A0A075B6P5 120 aa12.3□□□□□ -0.44
VTI1B-205ENST00000555543 IGKV2D-28P01615 120 aa12.3□□□□□ -0.44
VTI1B-205ENST00000555543 TSPEAR-AS2P59090 65 aa12.3□□□□□ -0.44
VTI1B-205ENST00000555543 DPM2O94777 84 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 SMIM13P0DJ93 91 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 PLNP26678 52 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 S100A12P80511 92 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 ATOH7Q8N100 152 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 NDUFA12Q9UI09 145 aa12.28□□□□□ -0.44
VTI1B-205ENST00000555543 RPL28P46779 137 aaKnown RBP12.27□□□□□ -0.45
VTI1B-205ENST00000555543 RPL24P83731 157 aaKnown RBP12.27□□□□□ -0.45
VTI1B-205ENST00000555543 LRP2P98164 4655 aa12.26□□□□□ -0.45
VTI1B-205ENST00000555543 IGLV1-50A0A075B6I6 118 aa12.26□□□□□ -0.45
VTI1B-205ENST00000555543 IGKCP01834 107 aa12.26□□□□□ -0.45
VTI1B-205ENST00000555543 KRTAP13-1Q8IUC0 172 aa12.26□□□□□ -0.45
VTI1B-205ENST00000555543 VAMP8Q9BV40 100 aa12.26□□□□□ -0.45
VTI1B-205ENST00000555543 HERV-K104P63124 156 aa12.25□□□□□ -0.45
VTI1B-205ENST00000555543 MEIG1Q5JSS6 88 aa12.25□□□□□ -0.45
VTI1B-205ENST00000555543 TMEM238C9JI98 176 aa12.24□□□□□ -0.45
VTI1B-205ENST00000555543 LEPROTO15243 131 aa12.24□□□□□ -0.45
VTI1B-205ENST00000555543 MYMXA0A1B0GTQ4 84 aa12.23□□□□□ -0.45
VTI1B-205ENST00000555543 MIR7-3HGQ8N6C7 128 aa12.23□□□□□ -0.45
VTI1B-205ENST00000555543 HSBP1L1C9JCN9 74 aa12.22□□□□□ -0.45
VTI1B-205ENST00000555543 UBE2AP49459 152 aa12.22□□□□□ -0.45
VTI1B-205ENST00000555543 PLEKHB2Q96CS7 222 aa12.22□□□□□ -0.45
VTI1B-205ENST00000555543 TMEM126AQ9H061 195 aa12.22□□□□□ -0.45
VTI1B-205ENST00000555543 J3QQQ9 107 aa12.21□□□□□ -0.45
VTI1B-205ENST00000555543 PAM16Q9Y3D7 125 aa12.21□□□□□ -0.45
VTI1B-205ENST00000555543 M0R378 163 aa12.2□□□□□ -0.46
VTI1B-205ENST00000555543 SPATA45Q537H7 98 aa12.2□□□□□ -0.46
VTI1B-205ENST00000555543 HERVK_113P61574 105 aa12.19□□□□□ -0.46
VTI1B-205ENST00000555543 PRLHP81277 87 aa12.19□□□□□ -0.46
VTI1B-205ENST00000555543 BOD1L2Q8IYS8 172 aa12.19□□□□□ -0.46
VTI1B-205ENST00000555543 A0A087X002 238 aa12.17□□□□□ -0.46
VTI1B-205ENST00000555543 LINC00587B1AMM8 73 aa12.17□□□□□ -0.46
VTI1B-205ENST00000555543 RPL13AP40429 203 aaKnown RBP12.17□□□□□ -0.46
VTI1B-205ENST00000555543 ANKRD39Q53RE8 183 aa12.17□□□□□ -0.46
VTI1B-205ENST00000555543 FAM19A1Q7Z5A9 133 aa12.17□□□□□ -0.46
VTI1B-205ENST00000555543 DAND5Q8N907 189 aa12.17□□□□□ -0.46
VTI1B-205ENST00000555543 NCR3O14931 201 aa12.16□□□□□ -0.46
VTI1B-205ENST00000555543 LGALS3P17931 250 aaKnown RBP12.15□□□□□ -0.46
VTI1B-205ENST00000555543 ANAPC11Q9NYG5 84 aa12.15□□□□□ -0.46
VTI1B-205ENST00000555543 NMUP48645 174 aa12.14□□□□□ -0.47
VTI1B-205ENST00000555543 PRO1933Q9H354 126 aa12.13□□□□□ -0.47
VTI1B-205ENST00000555543 E9PLD3 99 aa12.12□□□□□ -0.47
VTI1B-205ENST00000555543 TSTD3H0UI37 97 aa12.12□□□□□ -0.47
VTI1B-205ENST00000555543 LOC107984156A0A0G2JMH3 177 aa12.11□□□□□ -0.47
VTI1B-205ENST00000555543 ARL17AQ8IVW1 177 aa12.11□□□□□ -0.47
VTI1B-205ENST00000555543 IGKV2D-26A0A0A0MRZ7 120 aa12.1□□□□□ -0.47
VTI1B-205ENST00000555543 CRYGAP11844 174 aa12.09□□□□□ -0.47
VTI1B-205ENST00000555543 KRTAP13-2Q52LG2 175 aa12.09□□□□□ -0.47
VTI1B-205ENST00000555543 A0A0J9YXY3 114 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 TRBV10-3A0A0K0K1G6 114 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 PRYO14603 147 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 COX8AP10176 69 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 C14orf144Q96I85 54 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 UQCR10Q9UDW1 63 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 RNF213Q63HN8 5207 aa12.08□□□□□ -0.48
VTI1B-205ENST00000555543 KCNQ1DNQ9H478 68 aa12.07□□□□□ -0.48
VTI1B-205ENST00000555543 EIF4EBP3O60516 100 aaPredicted RBP12.06□□□□□ -0.48
VTI1B-205ENST00000555543 SPRR1AP35321 89 aa12.06□□□□□ -0.48
VTI1B-205ENST00000555543 ADAMTSL4-AS1Q5T5F5 129 aa12.06□□□□□ -0.48
VTI1B-205ENST00000555543 MIEN1Q9BRT3 115 aa12.06□□□□□ -0.48
VTI1B-205ENST00000555543 HIGD2AQ9BW72 106 aa12.06□□□□□ -0.48
VTI1B-205ENST00000555543 LPAP08519 4548 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms