RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 LIMD2Q9BT23 127 aa6.41□□□□□ -1.38
SIX4-202ENST00000554079 KIAA0087Q14695 138 aa6.4□□□□□ -1.38
SIX4-202ENST00000554079 Q75L30 129 aa6.4□□□□□ -1.38
SIX4-202ENST00000554079 TLN1Q9Y490 2541 aaKnown RBP6.4□□□□□ -1.38
SIX4-202ENST00000554079 HRNRQ86YZ3 2850 aaPredicted RBP6.4□□□□□ -1.38
SIX4-202ENST00000554079 SVEP1Q4LDE5 3571 aa6.4□□□□□ -1.39
SIX4-202ENST00000554079 TRGV4A0A0C4DH28 118 aa6.4□□□□□ -1.39
SIX4-202ENST00000554079 LOC100131303A0A0U1RQF7 123 aa6.4□□□□□ -1.39
SIX4-202ENST00000554079 INSP01308 110 aa6.4□□□□□ -1.39
SIX4-202ENST00000554079 KLK12Q9UKR0 248 aa6.4□□□□□ -1.39
SIX4-202ENST00000554079 A6NDX4 124 aa6.39□□□□□ -1.39
SIX4-202ENST00000554079 LY6EQ16553 131 aa6.39□□□□□ -1.39
SIX4-202ENST00000554079 PRR15LQ9BU68 103 aa6.39□□□□□ -1.39
SIX4-202ENST00000554079 CFAP46Q8IYW2 2715 aa6.39□□□□□ -1.39
SIX4-202ENST00000554079 SPTA1P02549 2419 aa6.39□□□□□ -1.39
SIX4-202ENST00000554079 ETDCA0A1B0GVM5 59 aa6.38□□□□□ -1.39
SIX4-202ENST00000554079 ST20-AS1Q8NBB2 130 aa6.38□□□□□ -1.39
SIX4-202ENST00000554079 IGHV4-28A0A0C4DH34 117 aa6.38□□□□□ -1.39
SIX4-202ENST00000554079 C9orf116Q5BN46 136 aaPredicted RBP6.38□□□□□ -1.39
SIX4-202ENST00000554079 ZNF462Q96JM2 2506 aa6.38□□□□□ -1.39
SIX4-202ENST00000554079 ABCA2Q9BZC7 2435 aa6.38□□□□□ -1.39
SIX4-202ENST00000554079 AKAP6Q13023 2319 aa6.37□□□□□ -1.39
SIX4-202ENST00000554079 PRB2P02812 416 aaPredicted RBP6.37□□□□□ -1.39
SIX4-202ENST00000554079 ELOF1P60002 83 aaKnown RBP6.37□□□□□ -1.39
SIX4-202ENST00000554079 CDC42SE1Q9NRR8 79 aa6.37□□□□□ -1.39
SIX4-202ENST00000554079 B9D2Q9BPU9 175 aa6.37□□□□□ -1.39
SIX4-202ENST00000554079 LOC101927531A0A1B0GV80 90 aa6.36□□□□□ -1.39
SIX4-202ENST00000554079 CCL24O00175 119 aa6.36□□□□□ -1.39
SIX4-202ENST00000554079 BRD3OSQ6XYD6 125 aa6.36□□□□□ -1.39
SIX4-202ENST00000554079 C10orf99Q6UWK7 81 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 Q9BRP9 147 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 C3orf84H3BNL1 204 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 H3BUX3 64 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 NDUFB1O75438 58 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 IGHV4-59P01825 116 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 MOBPQ13875 183 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 MAP6D1Q9H9H5 199 aa6.35□□□□□ -1.39
SIX4-202ENST00000554079 A6NED7 52 aa6.34□□□□□ -1.39
SIX4-202ENST00000554079 HIGD2BQ4VC39 106 aa6.34□□□□□ -1.39
SIX4-202ENST00000554079 IGHV4-61A0A0C4DH41 118 aa6.33□□□□□ -1.4
SIX4-202ENST00000554079 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.33□□□□□ -1.4
SIX4-202ENST00000554079 LINC00208Q96KT6 92 aa6.33□□□□□ -1.4
SIX4-202ENST00000554079 GCN1Q92616 2671 aaKnown RBP6.33□□□□□ -1.4
SIX4-202ENST00000554079 FASNP49327 2511 aaKnown RBP6.32□□□□□ -1.4
SIX4-202ENST00000554079 UBR5O95071 2799 aaPredicted RBP6.32□□□□□ -1.4
SIX4-202ENST00000554079 SPANXA2-OT1Q8N9U9 137 aa6.32□□□□□ -1.4
SIX4-202ENST00000554079 HELZ2Q9BYK8 2649 aaKnown RBP6.31□□□□□ -1.4
SIX4-202ENST00000554079 ANKHD1Q8IWZ3 2542 aaKnown RBP6.31□□□□□ -1.4
SIX4-202ENST00000554079 ASH1LQ9NR48 2969 aaKnown RBP6.31□□□□□ -1.4
SIX4-202ENST00000554079 WNK1Q9H4A3 2382 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 TENM4Q6N022 2769 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 VPREB1P12018 145 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 CLPSL2Q6UWE3 100 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 NKAPP1Q8N9T2 125 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 KCNQ1DNQ9H478 68 aa6.3□□□□□ -1.4
SIX4-202ENST00000554079 COL12A1Q99715 3063 aa6.29□□□□□ -1.4
SIX4-202ENST00000554079 MYO18BQ8IUG5 2567 aa6.29□□□□□ -1.4
SIX4-202ENST00000554079 NBASA2RRP1 2371 aa6.29□□□□□ -1.4
SIX4-202ENST00000554079 DSCR10P59022 87 aa6.29□□□□□ -1.4
SIX4-202ENST00000554079 FBXL19-AS1Q494R0 122 aa6.29□□□□□ -1.4
SIX4-202ENST00000554079 NOP10Q9NPE3 64 aaKnown RBP6.29□□□□□ -1.4
SIX4-202ENST00000554079 A0A1B0GUV1 79 aa6.28□□□□□ -1.4
SIX4-202ENST00000554079 DSCR9P59020 149 aa6.28□□□□□ -1.4
SIX4-202ENST00000554079 BAHCC1Q9P281 2608 aa6.28□□□□□ -1.4
SIX4-202ENST00000554079 LINC00528Q8N1L1 170 aa6.28□□□□□ -1.4
SIX4-202ENST00000554079 CELSR1Q9NYQ6 3014 aa6.28□□□□□ -1.4
SIX4-202ENST00000554079 PRR26Q8N8Z3 221 aa6.27□□□□□ -1.41
SIX4-202ENST00000554079 A0A1B0GW54 56 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 K7EQZ3 153 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 SLURP1P55000 103 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 UNQ6190/PRO20217Q6UXQ8 127 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 PLAC8Q9NZF1 115 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 IGLV5-48A0A075B6I7 105 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 FLNCQ14315 2725 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 C2CD3Q4AC94 2353 aa6.26□□□□□ -1.41
SIX4-202ENST00000554079 A0A0J9YWU9 116 aa6.25□□□□□ -1.41
SIX4-202ENST00000554079 A0A1W2PNM2 257 aa6.25□□□□□ -1.41
SIX4-202ENST00000554079 A0A1W2PPR1 153 aa6.25□□□□□ -1.41
SIX4-202ENST00000554079 LINC00313P59037 77 aa6.25□□□□□ -1.41
SIX4-202ENST00000554079 CHCHD10Q8WYQ3 142 aaPredicted RBP6.25□□□□□ -1.41
SIX4-202ENST00000554079 ODF3L2Q3SX64 289 aa6.24□□□□□ -1.41
SIX4-202ENST00000554079 KPRPQ5T749 579 aaPredicted RBP6.24□□□□□ -1.41
SIX4-202ENST00000554079 HIVEP3Q5T1R4 2406 aa6.24□□□□□ -1.41
SIX4-202ENST00000554079 MAP1AP78559 2803 aaPredicted RBP6.23□□□□□ -1.41
SIX4-202ENST00000554079 SPTAN1Q13813 2472 aaKnown RBP6.23□□□□□ -1.41
SIX4-202ENST00000554079 MP68P56378 58 aa6.23□□□□□ -1.41
SIX4-202ENST00000554079 LINC01554Q52M75 96 aa6.23□□□□□ -1.41
SIX4-202ENST00000554079 PRAC1Q96KF2 57 aa6.23□□□□□ -1.41
SIX4-202ENST00000554079 WFDC10AQ9H1F0 79 aa6.23□□□□□ -1.41
SIX4-202ENST00000554079 LINC01558Q9Y6Z2 57 aa6.23□□□□□ -1.41
SIX4-202ENST00000554079 SPAG11BQ08648 103 aa6.22□□□□□ -1.41
SIX4-202ENST00000554079 COA5Q86WW8 74 aa6.22□□□□□ -1.41
SIX4-202ENST00000554079 C16orf74Q96GX8 76 aa6.22□□□□□ -1.41
SIX4-202ENST00000554079 DEFB136Q30KP8 78 aa6.21□□□□□ -1.41
SIX4-202ENST00000554079 KHDC1LQ5JSQ8 128 aa6.21□□□□□ -1.41
SIX4-202ENST00000554079 C18orf65Q6ZTR6 163 aa6.21□□□□□ -1.41
SIX4-202ENST00000554079 Q8N377 158 aa6.21□□□□□ -1.41
SIX4-202ENST00000554079 C9orf163Q8N9P6 203 aa6.21□□□□□ -1.41
SIX4-202ENST00000554079 NOTCH3Q9UM47 2321 aa6.21□□□□□ -1.42
SIX4-202ENST00000554079 IGLV10-54A0A075B6I4 117 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms