RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TRAV7A0A075B6U4 112 aa8.49□□□□□ -1.05
SHMT2-207ENST00000553837 SS18Q15532 418 aa8.49□□□□□ -1.05
SHMT2-207ENST00000553837 A0A0U1RQV1 116 aa8.49□□□□□ -1.05
SHMT2-207ENST00000553837 ENHOQ6UWT2 76 aa8.49□□□□□ -1.05
SHMT2-207ENST00000553837 LINC00167Q96N53 147 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 NOTCH2Q04721 2471 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 IGLV4-60A0A075B6I1 120 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 TMEM256-PLSCR3K7ERE1 68 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 DEFB130BP0DP73 79 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 DEFB130AP0DP74 79 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 FAM19A1Q7Z5A9 133 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 WFDC9Q8NEX5 89 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 UBL5Q9BZL1 73 aa8.48□□□□□ -1.05
SHMT2-207ENST00000553837 LAMTOR3Q9UHA4 124 aa8.47□□□□□ -1.05
SHMT2-207ENST00000553837 MAST4O15021 2626 aa8.47□□□□□ -1.05
SHMT2-207ENST00000553837 X6R8D5 127 aa8.46□□□□□ -1.05
SHMT2-207ENST00000553837 INAFM1C9JVW0 142 aa8.46□□□□□ -1.06
SHMT2-207ENST00000553837 TRBV6-8A0A0A6YYG3 113 aa8.45□□□□□ -1.06
SHMT2-207ENST00000553837 IGKV3OR2-268A0A0C4DH90 116 aa8.45□□□□□ -1.06
SHMT2-207ENST00000553837 TRBV7-6A0A0J9YX20 115 aa8.45□□□□□ -1.06
SHMT2-207ENST00000553837 NSD1Q96L73 2696 aaPredicted RBP8.45□□□□□ -1.06
SHMT2-207ENST00000553837 LINC00612Q8N6U2 182 aa8.45□□□□□ -1.06
SHMT2-207ENST00000553837 Q8N814 137 aa8.45□□□□□ -1.06
SHMT2-207ENST00000553837 PMAIP1Q13794 54 aa8.44□□□□□ -1.06
SHMT2-207ENST00000553837 TRRAPQ9Y4A5 3859 aa8.43□□□□□ -1.06
SHMT2-207ENST00000553837 IGHV3OR16-9A0A0B4J2B5 98 aa8.43□□□□□ -1.06
SHMT2-207ENST00000553837 RBM3P98179 157 aaKnown RBP8.43□□□□□ -1.06
SHMT2-207ENST00000553837 A0A087WZ39 114 aa8.42□□□□□ -1.06
SHMT2-207ENST00000553837 PRR15Q8IV56 129 aa8.42□□□□□ -1.06
SHMT2-207ENST00000553837 GYPEP15421 78 aa8.41□□□□□ -1.06
SHMT2-207ENST00000553837 HIVEP1P15822 2718 aa8.41□□□□□ -1.06
SHMT2-207ENST00000553837 DEFB4AO15263 64 aa8.41□□□□□ -1.06
SHMT2-207ENST00000553837 A0A096LPF7 62 aa8.4□□□□□ -1.06
SHMT2-207ENST00000553837 F8WEM9 126 aa8.4□□□□□ -1.06
SHMT2-207ENST00000553837 LINC00474Q9P2X8 69 aa8.4□□□□□ -1.06
SHMT2-207ENST00000553837 Q6ZRU5 148 aa8.39□□□□□ -1.07
SHMT2-207ENST00000553837 CD164Q04900 197 aa8.39□□□□□ -1.07
SHMT2-207ENST00000553837 DEFB135Q30KP9 77 aa8.38□□□□□ -1.07
SHMT2-207ENST00000553837 C9orf66Q5T8R8 295 aa8.38□□□□□ -1.07
SHMT2-207ENST00000553837 LINC00959A0A1B0GUT2 108 aa8.37□□□□□ -1.07
SHMT2-207ENST00000553837 NANOS2P60321 138 aaKnown RBP8.37□□□□□ -1.07
SHMT2-207ENST00000553837 ATRQ13535 2644 aa8.37□□□□□ -1.07
SHMT2-207ENST00000553837 LOC110117498A0A087WWA1 95 aa8.36□□□□□ -1.07
SHMT2-207ENST00000553837 CLPSL2Q6UWE3 100 aa8.36□□□□□ -1.07
SHMT2-207ENST00000553837 Q6ZQT0 140 aa8.36□□□□□ -1.07
SHMT2-207ENST00000553837 Q8N3U1 123 aa8.36□□□□□ -1.07
SHMT2-207ENST00000553837 PRO0255Q9UI72 69 aa8.36□□□□□ -1.07
SHMT2-207ENST00000553837 LINC01547P58512 204 aaPredicted RBP8.35□□□□□ -1.07
SHMT2-207ENST00000553837 TEP1Q99973 2627 aaKnown RBP8.35□□□□□ -1.07
SHMT2-207ENST00000553837 IGHV4-28A0A0C4DH34 117 aa8.34□□□□□ -1.07
SHMT2-207ENST00000553837 HAMPP81172 84 aa8.34□□□□□ -1.07
SHMT2-207ENST00000553837 RMI2Q96E14 147 aa8.34□□□□□ -1.07
SHMT2-207ENST00000553837 C11orf68Q9H3H3 251 aaKnown RBP8.34□□□□□ -1.07
SHMT2-207ENST00000553837 CELA1Q9UNI1 258 aa8.34□□□□□ -1.07
SHMT2-207ENST00000553837 TRAV10A0A0B4J240 114 aa8.34□□□□□ -1.08
SHMT2-207ENST00000553837 ZNF561-AS1K7EIQ3 104 aa8.34□□□□□ -1.08
SHMT2-207ENST00000553837 PRR3P79522 188 aaKnown RBP8.34□□□□□ -1.08
SHMT2-207ENST00000553837 Q8IZM0 81 aa8.34□□□□□ -1.08
SHMT2-207ENST00000553837 SNURFQ9Y675 71 aa8.34□□□□□ -1.08
SHMT2-207ENST00000553837 LYRM9A8MSI8 78 aa8.33□□□□□ -1.08
SHMT2-207ENST00000553837 CXCL6P80162 114 aa8.33□□□□□ -1.08
SHMT2-207ENST00000553837 A0A1B0GUV1 79 aa8.32□□□□□ -1.08
SHMT2-207ENST00000553837 PDE6GP18545 87 aa8.32□□□□□ -1.08
SHMT2-207ENST00000553837 LINC00575Q6W349 94 aa8.32□□□□□ -1.08
SHMT2-207ENST00000553837 Q6ZVQ6 151 aa8.32□□□□□ -1.08
SHMT2-207ENST00000553837 C6orf223Q8N319 242 aa8.32□□□□□ -1.08
SHMT2-207ENST00000553837 COX17Q14061 63 aa8.31□□□□□ -1.08
SHMT2-207ENST00000553837 Q8NAQ8 132 aa8.31□□□□□ -1.08
SHMT2-207ENST00000553837 ERC2-IT1O76042 136 aa8.31□□□□□ -1.08
SHMT2-207ENST00000553837 MIFP14174 115 aa8.31□□□□□ -1.08
SHMT2-207ENST00000553837 C6orf99Q4VX62 202 aa8.31□□□□□ -1.08
SHMT2-207ENST00000553837 ESRGQ1W209 222 aa8.3□□□□□ -1.08
SHMT2-207ENST00000553837 H3BQ85 93 aa8.29□□□□□ -1.08
SHMT2-207ENST00000553837 APOC4P55056 127 aa8.29□□□□□ -1.08
SHMT2-207ENST00000553837 LINC00269Q8N2A0 174 aa8.29□□□□□ -1.08
SHMT2-207ENST00000553837 DAD1P61803 113 aa8.29□□□□□ -1.08
SHMT2-207ENST00000553837 MPLKIPQ8TAP9 179 aa8.29□□□□□ -1.08
SHMT2-207ENST00000553837 TRBV7-4A0A0J9YYF1 115 aa8.28□□□□□ -1.08
SHMT2-207ENST00000553837 RETNQ9HD89 108 aa8.28□□□□□ -1.08
SHMT2-207ENST00000553837 IGLV10-54A0A075B6I4 117 aa8.27□□□□□ -1.09
SHMT2-207ENST00000553837 IGHV4-30-4P0DP06 118 aa8.27□□□□□ -1.09
SHMT2-207ENST00000553837 M0R2N4 97 aa8.27□□□□□ -1.09
SHMT2-207ENST00000553837 KIAA0087Q14695 138 aa8.26□□□□□ -1.09
SHMT2-207ENST00000553837 HTN3P15516 51 aa8.25□□□□□ -1.09
SHMT2-207ENST00000553837 FAM229BQ4G0N7 80 aa8.25□□□□□ -1.09
SHMT2-207ENST00000553837 CHCHD10Q8WYQ3 142 aaPredicted RBP8.25□□□□□ -1.09
SHMT2-207ENST00000553837 TM2D3Q9BRN9 247 aa8.25□□□□□ -1.09
SHMT2-207ENST00000553837 F8P00451 2351 aa8.25□□□□□ -1.09
SHMT2-207ENST00000553837 ANGP03950 147 aaKnown RBP8.25□□□□□ -1.09
SHMT2-207ENST00000553837 REG3AQ06141 175 aa8.24□□□□□ -1.09
SHMT2-207ENST00000553837 KRTAP21-3Q3LHN1 58 aa8.24□□□□□ -1.09
SHMT2-207ENST00000553837 CD164L2Q6UWJ8 174 aa8.24□□□□□ -1.09
SHMT2-207ENST00000553837 ANK2Q01484 3957 aa8.24□□□□□ -1.09
SHMT2-207ENST00000553837 SPART-AS1P0CW21 52 aa8.23□□□□□ -1.09
SHMT2-207ENST00000553837 TMEM254Q8TBM7 123 aa8.23□□□□□ -1.09
SHMT2-207ENST00000553837 CMYA5Q8N3K9 4069 aa8.23□□□□□ -1.09
SHMT2-207ENST00000553837 NREPQ16612 68 aa8.22□□□□□ -1.09
SHMT2-207ENST00000553837 C9orf116Q5BN46 136 aaPredicted RBP8.22□□□□□ -1.09
SHMT2-207ENST00000553837 MUC7Q8TAX7 377 aa8.22□□□□□ -1.09
SHMT2-207ENST00000553837 OXLD1Q5BKU9 147 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms