RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TRACP01848 142 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 MALP21145 153 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 LINC01556Q5JQF7 62 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 CFAP161Q6P656 301 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 CLPSL2Q6UWE3 100 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 LINC00337Q8N6G1 96 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 C15orf53Q8NAA6 179 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 PPDPFLQ8WWR9 84 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 CARD19Q96LW7 228 aa4.04□□□□□ -1.76
VIPAS39-204ENST00000553576 PKD1L1Q8TDX9 2849 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 IGLV10-54A0A075B6I4 117 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 TRAV10A0A0B4J240 114 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 C9JAW5 83 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 H0YGX0 51 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 CRPP02741 224 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 PFN2P35080 140 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 NANOS2P60321 138 aaKnown RBP4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 DEFB121Q5J5C9 76 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 C2orf82Q6UX34 121 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 NTN5Q8WTR8 489 aaPredicted RBP4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 VPS25Q9BRG1 176 aa4.03□□□□□ -1.76
VIPAS39-204ENST00000553576 DNAH10OSP0CZ25 163 aa4.02□□□□□ -1.77
VIPAS39-204ENST00000553576 RNF151Q2KHN1 245 aa4.02□□□□□ -1.77
VIPAS39-204ENST00000553576 WFDC10BQ8IUB3 73 aa4.02□□□□□ -1.77
VIPAS39-204ENST00000553576 MTURNQ8N3F0 131 aa4.02□□□□□ -1.77
VIPAS39-204ENST00000553576 MAST4O15021 2626 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 A0A1B0GX51 115 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 SPAG11BQ08648 103 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 UNQ6190/PRO20217Q6UXQ8 127 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 SMIM11BQ8TCY0 68 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 CLEC2BQ92478 149 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 UBE2WQ96B02 151 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 C2orf48Q96LS8 159 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 TMEM126AQ9H061 195 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 DNAH9Q9NYC9 4486 aa4.01□□□□□ -1.77
VIPAS39-204ENST00000553576 C10orf25Q5T742 122 aa4□□□□□ -1.77
VIPAS39-204ENST00000553576 UPK3BQ9BT76 320 aa4□□□□□ -1.77
VIPAS39-204ENST00000553576 DNAH1Q9P2D7 4330 aa4□□□□□ -1.77
VIPAS39-204ENST00000553576 DYNC2H1Q8NCM8 4307 aaKnown RBP3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 C9orf116Q5BN46 136 aaPredicted RBP3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 C6orf223Q8N319 242 aa3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 FAM218AQ96MZ4 157 aa3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 SIGMAR1Q99720 223 aa3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 COL6A5A8TX70 2615 aa3.99□□□□□ -1.77
VIPAS39-204ENST00000553576 TENM3Q9P273 2699 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 BAALC-AS2P0C853 105 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 C15orf56Q8N910 161 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 LINC00167Q96N53 147 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 C1orf43Q9BWL3 253 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 C6orf48Q9UBA6 75 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 C22orf24Q9Y442 160 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 LINC00588Q9Y4M8 146 aa3.98□□□□□ -1.77
VIPAS39-204ENST00000553576 TEX49A0A1B0GTD5 131 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 FAM240AA0A1B0GVK7 77 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 IGLV6-57P01721 117 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 PRB2P02812 416 aaPredicted RBP3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 SCGB1A1P11684 91 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 OR13C6PQ8NH95 151 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 B9D2Q9BPU9 175 aa3.97□□□□□ -1.77
VIPAS39-204ENST00000553576 NDUFC2-KCTD14E9PQ53 114 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 TLX1NBP0CAT3 122 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 PRR3P79522 188 aaKnown RBP3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 Q8NDZ9 215 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 MRAPQ8TCY5 172 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 RMI2Q96E14 147 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 LINC00526Q96FQ7 95 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 OBSCN-AS1Q96MR7 158 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 CAMK2N2Q96S95 79 aa3.96□□□□□ -1.78
VIPAS39-204ENST00000553576 IGKV2D-24A0A075B6R9 120 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 A0A087WYN8 130 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 TRBV7-6A0A0J9YX20 115 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 DNAL4O96015 105 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 ACYP1P07311 99 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 NHLRC4P0CG21 123 aaPredicted RBP3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 Q6ZRU5 148 aa3.95□□□□□ -1.78
VIPAS39-204ENST00000553576 H3BQ85 93 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 SNCGO76070 127 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 INAFM2P0DMQ5 153 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 VPREB1P12018 145 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 PCP4P48539 62 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 SYCNQ0VAF6 134 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 HIGD2BQ4VC39 106 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 S100A7L2Q5SY68 101 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 LINC00575Q6W349 94 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 SDIM1Q6ZPB5 146 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 Q8N814 137 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 APLNQ9ULZ1 77 aa3.94□□□□□ -1.78
VIPAS39-204ENST00000553576 NOTCH1P46531 2555 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 TMEM256-PLSCR3K7ERE1 68 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 M0R378 163 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 LECT2O14960 151 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 KRTAP5-11Q6L8G4 156 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 Q9HAA7 133 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 ORMDL1Q9P0S3 153 aa3.93□□□□□ -1.78
VIPAS39-204ENST00000553576 IGLV5-37A0A075B6J1 123 aa3.92□□□□□ -1.78
VIPAS39-204ENST00000553576 NCR3O14931 201 aa3.92□□□□□ -1.78
VIPAS39-204ENST00000553576 C6orf99Q4VX62 202 aa3.92□□□□□ -1.78
VIPAS39-204ENST00000553576 Q6ZRP5 223 aa3.92□□□□□ -1.78
VIPAS39-204ENST00000553576 NBEAL1Q6ZS30 2694 aa3.92□□□□□ -1.78
VIPAS39-204ENST00000553576 TRBV10-3A0A0K0K1G6 114 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms