RNA–Protein interactions for RNA: ENST00000552188.1

CCDC65-204, Transcript of coiled-coil domain containing 65, humanhuman

TSL 3

Gene CCDC65, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65-204ENST00000552188 CHCHD1Q96BP2 118 aaKnown RBP3.7□□□□□ -1.82
CCDC65-204ENST00000552188 SRRM2Q9UQ35 2752 aaKnown RBP3.7□□□□□ -1.82
CCDC65-204ENST00000552188 KRTAP29-1A8MX34 341 aaPredicted RBP3.69□□□□□ -1.82
CCDC65-204ENST00000552188 SMIM1B2RUZ4 78 aa3.69□□□□□ -1.82
CCDC65-204ENST00000552188 KRTAP10-4P60372 401 aaPredicted RBP3.69□□□□□ -1.82
CCDC65-204ENST00000552188 PRR3P79522 188 aaKnown RBP3.69□□□□□ -1.82
CCDC65-204ENST00000552188 PHF5AQ7RTV0 110 aaKnown RBP3.69□□□□□ -1.82
CCDC65-204ENST00000552188 URB1-AS1Q96HZ7 61 aa3.69□□□□□ -1.82
CCDC65-204ENST00000552188 KRTAP4-9Q9BYQ8 210 aa3.69□□□□□ -1.82
CCDC65-204ENST00000552188 IGLV5-45A0A087WSX0 123 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 A0A096LNJ9 63 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 TRGC2P03986 189 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 IGLC3P0DOY3 106 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 HNRNPA3P51991 378 aaKnown RBP3.68□□□□□ -1.82
CCDC65-204ENST00000552188 C1orf137Q5JT78 98 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 REG3GQ6UW15 175 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 IFI27L1Q96BM0 104 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 YPEL4Q96NS1 127 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 KRTAP4-2Q9BYR5 136 aa3.68□□□□□ -1.82
CCDC65-204ENST00000552188 FAM168BA1KXE4 195 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 LEPROTL1O95214 131 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 ZNF22P17026 224 aaPredicted RBP3.67□□□□□ -1.82
CCDC65-204ENST00000552188 SPINK6Q6UWN8 80 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 FAM19A2Q8N3H0 131 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 PRR26Q8N8Z3 221 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 XAGE1AQ9HD64 81 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 PSORS1C2Q9UIG4 136 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 V9GYY9 64 aa3.67□□□□□ -1.82
CCDC65-204ENST00000552188 FLG2Q5D862 2391 aaPredicted RBP3.67□□□□□ -1.82
CCDC65-204ENST00000552188 PKHD1L1Q86WI1 4243 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 TRAV12-1A0A0B4J245 112 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 C11orf86A6NJI1 115 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 FABP4P15090 132 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 PFN2P35080 140 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 C9orf129Q5T035 196 aaKnown RBP3.66□□□□□ -1.82
CCDC65-204ENST00000552188 SFTA2Q6UW10 78 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 NKAPP1Q8N9T2 125 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 HSPB8Q9UJY1 196 aa3.66□□□□□ -1.82
CCDC65-204ENST00000552188 COLCA2A8K830 154 aa3.65□□□□□ -1.83
CCDC65-204ENST00000552188 SERF1AO75920 110 aa3.65□□□□□ -1.83
CCDC65-204ENST00000552188 ZNF625Q96I27 306 aaPredicted RBP3.65□□□□□ -1.83
CCDC65-204ENST00000552188 ERG28Q9UKR5 140 aa3.65□□□□□ -1.83
CCDC65-204ENST00000552188 C22orf24Q9Y442 160 aa3.65□□□□□ -1.83
CCDC65-204ENST00000552188 IGLV5-39A0A0G2JS06 123 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 SCO1O75880 301 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 IGLV7-43P04211 117 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 LINC00158P58513 81 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 HERVK_113P61574 105 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 RPL24P83731 157 aaKnown RBP3.64□□□□□ -1.83
CCDC65-204ENST00000552188 COX17Q14061 63 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 MEIG1Q5JSS6 88 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 MRPL55Q7Z7F7 128 aaKnown RBP3.64□□□□□ -1.83
CCDC65-204ENST00000552188 DIRC1Q969H9 104 aa3.64□□□□□ -1.83
CCDC65-204ENST00000552188 TMEM223A0PJW6 202 aa3.63□□□□□ -1.83
CCDC65-204ENST00000552188 NUPR1O60356 82 aa3.63□□□□□ -1.83
CCDC65-204ENST00000552188 SRSF9Q13242 221 aaKnown RBP eCLIP3.63□□□□□ -1.83
CCDC65-204ENST00000552188 DMBT1Q9UGM3 2413 aaPredicted RBP3.62□□□□□ -1.83
CCDC65-204ENST00000552188 MYMXA0A1B0GTQ4 84 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 RPL37AP8A6NKH3 93 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 LINC00587B1AMM8 73 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 DPM2O94777 84 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 IGKCP01834 107 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 PLNP26678 52 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 SEC61BP60468 96 aaKnown RBP3.62□□□□□ -1.83
CCDC65-204ENST00000552188 LINC00518Q8N0U6 118 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 LINC01600Q96MT4 127 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 TP73-AS1Q9UF72 201 aa3.62□□□□□ -1.83
CCDC65-204ENST00000552188 MYCBP2O75592 4640 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 H0Y9J4 135 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 LEPROTO15243 131 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 LGALS3P17931 250 aaKnown RBP3.61□□□□□ -1.83
CCDC65-204ENST00000552188 RPL28P46779 137 aaKnown RBP3.61□□□□□ -1.83
CCDC65-204ENST00000552188 KRTAP7-1Q8IUC3 87 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 PLEKHB2Q96CS7 222 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 LINC00167Q96N53 147 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 PMCHL2Q9BQD1 86 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 SND1-IT1Q9HBX3 110 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 NDUFA12Q9UI09 145 aa3.61□□□□□ -1.83
CCDC65-204ENST00000552188 FAT3Q8TDW7 4589 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 IGLV5-37A0A075B6J1 123 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 IGKV2-28A0A075B6P5 120 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 ZNF861PO60384 105 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BKO60814 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 IGKV2D-28P01615 120 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BJP06899 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 SMIM13P0DJ93 91 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BOP23527 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BBP33778 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 UBE2AP49459 152 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BDP58876 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BCP62807 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST2H2BEQ16778 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.6□□□□□ -1.83
CCDC65-204ENST00000552188 KRTAP11-1Q8IUC1 163 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BHQ93079 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BNQ99877 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 HIST1H2BMQ99879 126 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
CCDC65-204ENST00000552188 J3QQQ9 107 aa3.59□□□□□ -1.83
CCDC65-204ENST00000552188 BCE1O60756 84 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms