RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 CTAG1AP78358 180 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 NKAPP1Q8N9T2 125 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 CST9LQ9H4G1 147 aa4.45□□□□□ -1.7
NEK3-201ENST00000550331 H3BRM9 83 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 ATP5LO75964 103 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 SPINK8P0C7L1 97 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 PCP4P48539 62 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 PMVKQ15126 192 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 KIAA1644Q3SXP7 199 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 KRTAP13-2Q52LG2 175 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
NEK3-201ENST00000550331 RAB5BP61020 215 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 TPRXLQ17RH7 258 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 KRTAP5-1Q6L8H4 278 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 LINC00304Q8N9R0 145 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 ANAPC11Q9NYG5 84 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 CRCT1Q9UGL9 99 aa4.43□□□□□ -1.7
NEK3-201ENST00000550331 FSIP2Q5CZC0 6907 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 IGKV2-28A0A075B6P5 120 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 IGKV2D-26A0A0A0MRZ7 120 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 IGLV5-39A0A0G2JS06 123 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 B5MCH6 92 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 IGKV2D-28P01615 120 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 IGLC3P0DOY3 106 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 CLLU1Q5K131 121 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 GNB1LQ9BYB4 327 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 TMEM126AQ9H061 195 aa4.42□□□□□ -1.7
NEK3-201ENST00000550331 SCO1O75880 301 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 VPREB1P12018 145 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 S100PP25815 95 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 KRTAP5-9P26371 169 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 PFN2P35080 140 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 PRLHP81277 87 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 RPL24P83731 157 aaKnown RBP4.41□□□□□ -1.7
NEK3-201ENST00000550331 COX17Q14061 63 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 COX19Q49B96 90 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 SFTA2Q6UW10 78 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 UQCC3Q6UW78 93 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 FA2HQ7L5A8 372 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 FAM19A1Q7Z5A9 133 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 RETNLBQ9BQ08 111 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 SND1-IT1Q9HBX3 110 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 SMCO4Q9NRQ5 59 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 ERG28Q9UKR5 140 aa4.41□□□□□ -1.7
NEK3-201ENST00000550331 TMEM218A2RU14 115 aa4.4□□□□□ -1.71
NEK3-201ENST00000550331 IGLV7-46A0A075B6I9 117 aa4.39□□□□□ -1.71
NEK3-201ENST00000550331 TMEM238C9JI98 176 aa4.39□□□□□ -1.71
NEK3-201ENST00000550331 M0R378 163 aa4.39□□□□□ -1.71
NEK3-201ENST00000550331 ZNF22P17026 224 aaPredicted RBP4.39□□□□□ -1.71
NEK3-201ENST00000550331 LCE1AQ5T7P2 110 aa4.39□□□□□ -1.71
NEK3-201ENST00000550331 A0A096LNJ9 63 aa4.38□□□□□ -1.71
NEK3-201ENST00000550331 A4D1N5 150 aa4.38□□□□□ -1.71
NEK3-201ENST00000550331 SPAG11AQ6PDA7 123 aa4.38□□□□□ -1.71
NEK3-201ENST00000550331 PLEKHB2Q96CS7 222 aa4.38□□□□□ -1.71
NEK3-201ENST00000550331 SEC11CQ9BY50 192 aa4.38□□□□□ -1.71
NEK3-201ENST00000550331 HBDP02042 147 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 NDUFA6P56556 154 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 FABP9Q0Z7S8 132 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 KRTAP5-4Q6L8H1 288 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 CBLN2Q8IUK8 224 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 Q8NDZ9 215 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 ZNF625Q96I27 306 aaPredicted RBP4.37□□□□□ -1.71
NEK3-201ENST00000550331 HIGD2AQ9BW72 106 aa4.37□□□□□ -1.71
NEK3-201ENST00000550331 LINC00614P0C842 121 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 TMEM170BQ5T4T1 132 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 FP248Q71RG6 208 aaPredicted RBP4.36□□□□□ -1.71
NEK3-201ENST00000550331 C3orf22Q8N5N4 141 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 C18orf32Q8TCD1 76 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 URB1-AS1Q96HZ7 61 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 SPRR4Q96PI1 79 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 PPDPFQ9H3Y8 114 aa4.36□□□□□ -1.71
NEK3-201ENST00000550331 ZNF706Q9Y5V0 76 aaPredicted RBP4.36□□□□□ -1.71
NEK3-201ENST00000550331 C11orf86A6NJI1 115 aa4.35□□□□□ -1.71
NEK3-201ENST00000550331 RHEBQ15382 184 aa4.35□□□□□ -1.71
NEK3-201ENST00000550331 BAGE3Q86Y29 109 aa4.35□□□□□ -1.71
NEK3-201ENST00000550331 LINC00158P58513 81 aa4.34□□□□□ -1.71
NEK3-201ENST00000550331 PRYO14603 147 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 SPRR1AP35321 89 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 PMCHL1Q16048 86 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 C10orf91Q5T1B1 145 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 LINC00337Q8N6G1 96 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 RPS10P5Q9NQ39 176 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 CHTOPQ9Y3Y2 248 aaKnown RBP4.33□□□□□ -1.72
NEK3-201ENST00000550331 TRAPPC1Q9Y5R8 145 aa4.33□□□□□ -1.72
NEK3-201ENST00000550331 TMEM223A0PJW6 202 aa4.32□□□□□ -1.72
NEK3-201ENST00000550331 LINC01547P58512 204 aaPredicted RBP4.32□□□□□ -1.72
NEK3-201ENST00000550331 KRTAP13-3Q3SY46 172 aa4.32□□□□□ -1.72
NEK3-201ENST00000550331 COMMD7Q86VX2 200 aa4.32□□□□□ -1.72
NEK3-201ENST00000550331 Q8NBF4 154 aa4.32□□□□□ -1.72
NEK3-201ENST00000550331 KCNQ1DNQ9H478 68 aa4.32□□□□□ -1.72
NEK3-201ENST00000550331 TRAV12-1A0A0B4J245 112 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 A0A0U1RRA0 63 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 LINC00587B1AMM8 73 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 ATP6V1G1O75348 118 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 SPINK1P00995 79 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 HERV-K104P63124 156 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 IFITM2Q01629 132 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 ASB16-AS1Q495Z4 193 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 LINC00483Q53H64 154 aa4.31□□□□□ -1.72
NEK3-201ENST00000550331 BOD1L2Q8IYS8 172 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms