RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 RPL39P62891 51 aaKnown RBP3.52□□□□□ -1.85
LIMA1-204ENST00000549064 Q6ZVH6 145 aa3.52□□□□□ -1.85
LIMA1-204ENST00000549064 SCO1O75880 301 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 GNG4P50150 75 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 IFITM3Q01628 133 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 SMAGPQ0VAQ4 97 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 FAM213BQ8TBF2 198 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 MBD3L1Q8WWY6 194 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 TIMM21Q9BVV7 248 aa3.51□□□□□ -1.85
LIMA1-204ENST00000549064 IGKV2-28A0A075B6P5 120 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 FXYD6-FXYD2A0A087WZ82 144 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 TGIF2-C20orf24A0A0A6YYL0 155 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 IGKV2D-28P01615 120 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 CCL20P78556 96 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 ORMDL2Q53FV1 153 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 FAM19A1Q7Z5A9 133 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 PLEKHB2Q96CS7 222 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 FAM210AQ96ND0 272 aa3.5□□□□□ -1.85
LIMA1-204ENST00000549064 HBBP68871 147 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 COX6B2Q6YFQ2 88 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 AMN1Q8IY45 258 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 SMIM12Q96EX1 92 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 TOMM7Q9P0U1 55 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 NDUFA12Q9UI09 145 aa3.49□□□□□ -1.85
LIMA1-204ENST00000549064 TMEM238C9JI98 176 aa3.48□□□□□ -1.85
LIMA1-204ENST00000549064 CKS1BP61024 79 aa3.48□□□□□ -1.85
LIMA1-204ENST00000549064 TIMM17AQ99595 171 aa3.48□□□□□ -1.85
LIMA1-204ENST00000549064 GNG13Q9P2W3 67 aa3.48□□□□□ -1.85
LIMA1-204ENST00000549064 SPINK1P00995 79 aa3.47□□□□□ -1.85
LIMA1-204ENST00000549064 RPL23P62829 140 aaKnown RBP3.47□□□□□ -1.85
LIMA1-204ENST00000549064 MRPS36P82909 103 aaKnown RBP3.47□□□□□ -1.85
LIMA1-204ENST00000549064 SPRR4Q96PI1 79 aa3.47□□□□□ -1.85
LIMA1-204ENST00000549064 HIGD2AQ9BW72 106 aa3.47□□□□□ -1.85
LIMA1-204ENST00000549064 TMEM191AQ9H0A3 160 aa3.47□□□□□ -1.85
LIMA1-204ENST00000549064 BIN3Q9NQY0 253 aa3.47□□□□□ -1.85
LIMA1-204ENST00000549064 TMEM126AQ9H061 195 aa3.46□□□□□ -1.86
LIMA1-204ENST00000549064 MANBALQ9NQG1 85 aa3.46□□□□□ -1.86
LIMA1-204ENST00000549064 SPANXA1Q9NS26 97 aa3.46□□□□□ -1.86
LIMA1-204ENST00000549064 MED9Q9NWA0 146 aa3.46□□□□□ -1.86
LIMA1-204ENST00000549064 FAM240AA0A1B0GVK7 77 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 C9orf92A6NGG3 77 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 M0R378 163 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 ARPC5O15511 151 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 GATCO43716 136 aaKnown RBP3.45□□□□□ -1.86
LIMA1-204ENST00000549064 PCP2Q8IVA1 136 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 FAM19A2Q8N3H0 131 aa3.45□□□□□ -1.86
LIMA1-204ENST00000549064 A0A1B0GUT8 65 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 UMAD1C9J7I0 102 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 F8VRH5 84 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 TCAPO15273 167 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 Q8IZM0 81 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 S100ZQ8WXG8 99 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 BORCS7Q96B45 105 aa3.44□□□□□ -1.86
LIMA1-204ENST00000549064 A0A1B0GVX0 72 aa3.43□□□□□ -1.86
LIMA1-204ENST00000549064 A8MWL6 223 aa3.43□□□□□ -1.86
LIMA1-204ENST00000549064 SMLR1H3BR10 107 aa3.43□□□□□ -1.86
LIMA1-204ENST00000549064 SLC25A20O43772 301 aa3.43□□□□□ -1.86
LIMA1-204ENST00000549064 MRPL51Q4U2R6 128 aaKnown RBP3.43□□□□□ -1.86
LIMA1-204ENST00000549064 SLC7A5P1Q8MH63 180 aa3.43□□□□□ -1.86
LIMA1-204ENST00000549064 HIGD1CA8MV81 97 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 PDE6DO43924 150 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 PPP1R17O96001 155 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 IFI27P40305 119 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-204ENST00000549064 RAB5BP61020 215 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 MOBPQ13875 183 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 KRTAP6-3Q3LI67 103 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 C6orf99Q4VX62 202 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 TMEM141Q96I45 108 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 SMIM2Q9BVW6 85 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 GNB1LQ9BYB4 327 aa3.42□□□□□ -1.86
LIMA1-204ENST00000549064 RPS29P62273 56 aaKnown RBP3.41□□□□□ -1.86
LIMA1-204ENST00000549064 FAM231DQ6ZW35 169 aa3.41□□□□□ -1.86
LIMA1-204ENST00000549064 C20orf78Q9BR46 151 aa3.41□□□□□ -1.86
LIMA1-204ENST00000549064 EIF5A2Q9GZV4 153 aaKnown RBP3.41□□□□□ -1.86
LIMA1-204ENST00000549064 TRBV24-1A0A075B6N3 115 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 NPYP01303 97 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 Q6Q795 121 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 BOD1L2Q8IYS8 172 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 Q8NDZ9 215 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 CDKN2A-AS1Q9UH64 79 aa3.4□□□□□ -1.87
LIMA1-204ENST00000549064 ZNF706Q9Y5V0 76 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-204ENST00000549064 A0A096LNJ9 63 aa3.39□□□□□ -1.87
LIMA1-204ENST00000549064 C5orf47Q569G3 176 aa3.39□□□□□ -1.87
LIMA1-204ENST00000549064 FAM104BQ5XKR9 115 aa3.39□□□□□ -1.87
LIMA1-204ENST00000549064 LINC00299Q6ZSB3 139 aa3.39□□□□□ -1.87
LIMA1-204ENST00000549064 C2orf88Q9BSF0 95 aa3.39□□□□□ -1.87
LIMA1-204ENST00000549064 CKS2P33552 79 aa3.38□□□□□ -1.87
LIMA1-204ENST00000549064 SMCR5Q8TEV8 140 aa3.38□□□□□ -1.87
LIMA1-204ENST00000549064 AMELXQ99217 191 aa3.38□□□□□ -1.87
LIMA1-204ENST00000549064 LINC00862A6NCI5 91 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 D6R8Y8 96 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 PSPHP1O15172 72 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 IGLV6-57P01721 117 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 MT2AP02795 61 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 RAB14P61106 215 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 LINC00483Q53H64 154 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 SSBP3-AS1Q7Z2R9 100 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 LINC01551Q86U37 167 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 COX7B2Q8TF08 81 aa3.37□□□□□ -1.87
LIMA1-204ENST00000549064 KANTRA0A1W2PQU2 76 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms